RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA683902" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA683902 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26861028 26861028 PRJNA683902_S_NODE_30301_length_177_cov_2.507143_g29857_i0 PRJNA683902 30301 177 2.507143 4.43764311 Dirofilaria immitis 6287 Nematoda Nematoda 50.4 1.62e-5   NR MCP9259841.1 6287 g29857 i0 51.9 0.88135593220339 52 25 88.1 0 175 20 2 53 MCP9259841.1 hypothetical protein [Dirofilaria immitis] diamond 156 50.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
27851774 27851774 PRJNA683902_S_NODE_35644_length_160_cov_1.878049_g35200_i0 PRJNA683902 35644 160 1.878049 3.0048784 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 53.9 5.67e-7   NR CAK5024798.1 390850 g35200 i0 46.9 12.825 49 26 91.9 0 156 10 38 86 CAK5024798.1 unnamed protein product [Meloidogyne enterolobii] diamond 2052 54.3 0.992633517495396 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
27903219 27903219 PRJNA683902_S_NODE_37285_length_156_cov_1.966387_g36841_i0 PRJNA683902 37285 156 1.966387 3.06756372 Longidorus vineacola 241698 Nematoda Nematoda 63.5 2.96e-10   NR YP_009346422.1 241698 g36841 i0 54.9 0.980769230769231 51 23 98.1 0 2 154 181 231 YP_009346422.1 cytochrome c oxidase subunit III [Longidorus vineacola] diamond 153 63.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Longidorus Longidorus vineacola
29292656 29292656 PRJNA683902_S_NODE_26689_length_193_cov_3.442308_g26245_i0 PRJNA683902 26689 193 3.442308 6.64365444 Trichuris suis 68888 Nematoda Nematoda 62 2.11e-10   NR KFD55927.1 68888 g26245 i0 55.2 0.901554404145078 58 26 90.2 0 18 191 20 77 KFD55927.1 hypothetical protein M513_03051, partial [Trichuris suis] diamond 174 62 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
30872014 30872014 PRJNA683902_S_NODE_23514_length_211_cov_7.051724_g23070_i0 PRJNA683902 23514 211 7.051724 14.87913764 Pristionchus fissidentatus 1538716 Nematoda Nematoda 42 0.0435   NR GMT28504.1 1538716 g23070 i0 51.2 0.582938388625592 41 17 55.5 2 9 125 123 162 GMT28504.1 hypothetical protein PFISCL1PPCAC_19801, partial [Pristionchus fissidentatus] diamond 123 42 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
32295556 32295556 PRJNA683902_S_NODE_25159_length_202_cov_1.727273_g24715_i0 PRJNA683902 25159 202 1.727273 3.48909146 Pristionchus fissidentatus 1538716 Nematoda Nematoda 43.5 0.0113   NR GMT33030.1 1538716 g24715 i0 36.5 0.935643564356436 63 28 80.2 3 166 5 153 212 GMT33030.1 hypothetical protein PFISCL1PPCAC_24327, partial [Pristionchus fissidentatus] diamond 189 43.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
32611400 32611400 PRJNA683902_S_NODE_24120_length_208_cov_1.894737_g23676_i0 PRJNA683902 24120 208 1.894737 3.94105296 Oesophagostomum dentatum 61180 Nematoda Nematoda 59.7 2.46e-8   NR KHJ98883.1 61180 g23676 i0 40.6 1.94711538461538 69 41 99.5 0 1 207 154 222 KHJ98883.1 ribosomal protein L10 [Oesophagostomum dentatum] diamond 405 59.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Oesophagostomum Oesophagostomum dentatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;