RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA683902" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA683902 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29260931 29260931 PRJNA683902_S_NODE_35229_length_161_cov_2.508065_g34785_i0 PRJNA683902 35229 161 2.508065 4.03798465 Anaerolineales bacterium 2073117 Bacteria Bacteria 52.8 2.85e-6   NR HLE28913.1 2073117 g34785 i0 72.4 4.09937888198758 29 8 54 0 161 75 215 243 HLE28913.1 WecB/TagA/CpsF family glycosyltransferase [Anaerolineales bacterium] diamond 660 52.8 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
31694036 31694036 PRJNA683902_S_NODE_31477_length_173_cov_2.036765_g31033_i0 PRJNA683902 31477 173 2.036765 3.52360345 Chloroflexia bacterium 2448782 Bacteria Bacteria 39.7 0.0306   NR HET6263163.1 2448782 g31033 i0 46.2 0.676300578034682 39 15 57.2 1 53 151 25 63 HET6263163.1 hypothetical protein [Chloroflexia bacterium] diamond 117 39.7 1 Bacteria   Bacillati Chloroflexota Chloroflexia       Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;