RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA683902" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA683902 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26924057 26924057 PRJNA683902_S_NODE_39142_length_152_cov_1.347826_g38698_i0 PRJNA683902 39142 152 1.347826 2.04869552 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 69.7 8.71e-13   NR KAJ9460647.1 91374 g38698 i0 66.7 0.947368421052632 48 16 94.7 0 150 7 62 109 KAJ9460647.1 60S ribosomal protein L13 [Diplonema papillatum] diamond 144 69.7 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
28313978 28313978 PRJNA683902_S_NODE_24286_length_207_cov_1.535294_g23842_i0 PRJNA683902 24286 207 1.535294 3.17805858 Stygiella incarcerata 1712417 Root_unresolved Root_unresolved 96.7 1.5199999999999995e-23   NR ANM86218.1 1712417 g23842 i0 64.7 7.88405797101449 68 24 98.6 0 2 205 18 85 ANM86218.1 40S ribosomal protein S18 [Stygiella incarcerata] diamond 1632 96.7 1 Eukaryota Discoba       Jakobida Stygiellidae Stygiella Stygiella incarcerata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;