RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA683669" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA683669 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
665026 665026 PRJNA683669_P_NODE_33601_length_241_cov_1.375000_g33369_i0 PRJNA683669 33601 241 1.375 3.31375 Amoeba proteus 5775 Tubulinea other_Eukaryota 130 4.2399999999999985e-34   NR AAP88974.1 5775 g33369 i0 77.2 0.983402489626556 79 18 98.3 0 237 1 1 79 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 237 130 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
15967650 15967650 PRJNA683669_P_NODE_16613_length_318_cov_1.110204_g16382_i0 PRJNA683669 16613 318 1.110204 3.53044872 Amoeba proteus 5775 Tubulinea other_Eukaryota 159 4.92e-45   NR AAP88974.1 5775 g16382 i0 81.3 0.858490566037736 91 17 85.8 0 275 3 4 94 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 273 159 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
27555857 27555857 PRJNA683669_P_NODE_16884_length_315_cov_1.590909_g16653_i0 PRJNA683669 16884 315 1.590909 5.01136335 Copromyxa protea 931554 Tubulinea other_Eukaryota 183 2.28e-53   NR BAN33737.1 931554 g16653 i0 87.1 0.961904761904762 101 13 96.2 0 314 12 364 464 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 303 183 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;