RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA683669" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA683669 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27619351 27619351 PRJNA683669_P_NODE_25864_length_251_cov_1.640449_g25632_i0 PRJNA683669 25864 251 1.640449 4.11752699 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 145 4.28e-40   NR WP_052191736.1 1340502 g25632 i0 98.7 0.932270916334661 78 1 93.2 0 234 1 1 78 WP_052191736.1 M23 family metallopeptidase [Cetobacterium sp. ZWU0022] diamond 234 145 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
30808879 30808879 PRJNA683669_P_NODE_21014_length_282_cov_1.473684_g20782_i0 PRJNA683669 21014 282 1.473684 4.15578888 Cetobacterium somerae 188913 Bacteria Bacteria 155 1.23e-41   NR WP_281700265.1 188913 g20782 i0 83.9 0.98936170212766 93 15 98.9 0 280 2 53 145 WP_281700265.1 ATP-dependent zinc metalloprotease FtsH [Cetobacterium somerae] diamond 279 155 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
32042071 32042071 PRJNA683669_P_NODE_26078_length_251_cov_0.865169_g25846_i0 PRJNA683669 26078 251 0.865169 2.17157419 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 173 1.84e-53   NR WP_047384902.1 1340502 g25846 i0 100 0.99203187250996006 83 0 99.2 0 249 1 17 99 WP_047384902.1 hypothetical protein [Cetobacterium sp. ZWU0022] diamond 249 173 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;