RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA682774" and tax_phylum = "Placozoa"

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tax_superkingdom 1

tax_phylum 1

  • Placozoa · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA682774 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29619599 29619599 PRJNA682774_P_NODE_4010_length_250_cov_0.881356_g3981_i0 PRJNA682774 4010 250 0.881356 2.20339 Opisthokonta 33154 Placozoa other_Eukaryota 54.3 3.21e-6   NR XP_002112436.1 10228 g3981 i0 36.1 3.288 72 45 85.2 1 230 18 15 86 XP_002112436.1 uncharacterized protein TRIADDRAFT_63948 [Trichoplax adhaerens] diamond 822 54.7 0.992687385740402 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens
30093573 30093573 PRJNA682774_P_NODE_3752_length_251_cov_0.876404_g3723_i0 PRJNA682774 3752 251 0.876404 2.19977404 Metazoa 33208 Placozoa other_Eukaryota 116 3.84e-30   NR XP_002115800.1 10228 g3723 i0 71.1 14.8804780876494 83 24 99.2 0 2 250 20 102 XP_002115800.1 expressed hypothetical protein [Trichoplax adhaerens] diamond 3735 116 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens
32137047 32137047 PRJNA682774_P_NODE_1258_length_386_cov_1.833866_g1229_i0 PRJNA682774 1258 386 1.833866 7.07872276 Trichoplax sp. H2 287889 Placozoa other_Eukaryota 88.6 1.69e-17   NR RDD42900.1 287889 g1229 i0 54.5 0.598445595854922 77 27 54.4 2 264 55 261 336 RDD42900.1 Protein DD3-3 [Trichoplax sp. H2] diamond 231 88.6 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax sp. H2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;