RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA682774" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA682774 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27840029 27840029 PRJNA682774_P_NODE_5484_length_242_cov_0.923077_g5455_i0 PRJNA682774 5484 242 0.923077 2.23384634 Eggerthella sp. 1929886 Bacteria Bacteria 164 1.48e-49   NR MBS5501525.1 1929886 g5455 i0 97.5 0.991735537190083 80 2 99.2 0 3 242 90 169 MBS5501525.1 nitroreductase family protein [Eggerthella sp.] diamond 240 164 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Eggerthella Eggerthella sp.
28483417 28483417 PRJNA682774_P_NODE_4986_length_244_cov_0.912281_g4957_i0 PRJNA682774 4986 244 0.912281 2.22596564 Cryptobacterium 84162 Bacteria Bacteria 147 4.5299999999999997e-39   NR CDD76499.1 1262868 g4957 i0 100 1.99180327868852 81 0 99.6 0 244 2 230 310 CDD76499.1 chromosome partition protein Smc [Cryptobacterium sp. CAG:338] diamond 486 147 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Cryptobacterium Cryptobacterium sp. CAG:338
28818711 28818711 PRJNA682774_P_NODE_2448_length_292_cov_1.273973_g2419_i0 PRJNA682774 2448 292 1.273973 3.72000116 Mycolicibacterium chitae 1792 Bacteria Bacteria 44.3 0.0182   NR WP_126334026.1 1792 g2419 i0 42.9 0.503424657534247 49 24 46.2 1 160 26 231 279 WP_126334026.1 precorrin-3B synthase [Mycolicibacterium chitae] diamond 147 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium chitae
29304220 29304220 PRJNA682774_P_NODE_3529_length_253_cov_0.866667_g3500_i0 PRJNA682774 3529 253 0.866667 2.19266751 Streptomycetaceae 2062 Bacteria Bacteria 82.8 4.25e-18   NR WP_033332243.1 68244 g3500 i0 55.9 3.1897233201581 68 25 78.3 2 2 199 64 128 WP_033332243.1 nuclear transport factor 2 family protein [Streptomyces novaecaesareae] diamond 807 82.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces novaecaesareae
31630720 31630720 PRJNA682774_P_NODE_4436_length_247_cov_0.896552_g4407_i0 PRJNA682774 4436 247 0.896552 2.21448344 Streptomyces sp. NPDC 1931 Bacteria Bacteria 41.6 0.0363   NR WP_400109962.1 3365689 g4407 i0 36.1 0.740890688259109 61 36 74.1 1 4 186 18 75 WP_400109962.1 DUF3592 domain-containing protein [Streptomyces sp. NPDC052396] diamond 183 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC052396
31820421 31820421 PRJNA682774_P_NODE_5397_length_242_cov_0.923077_g5368_i0 PRJNA682774 5397 242 0.923077 2.23384634 uncultured Nocardioides sp. 198441 Bacteria Bacteria 59.3 4.13e-8   NR WP_298518511.1 198441 g5368 i0 43.8 2.97520661157025 80 41 99.2 3 242 3 116 191 WP_298518511.1 alpha/beta hydrolase [uncultured Nocardioides sp.] diamond 720 59.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides uncultured Nocardioides sp.
32433578 32433578 PRJNA682774_P_NODE_4699_length_246_cov_0.901734_g4670_i0 PRJNA682774 4699 246 0.901734 2.21826564 Bacteria 2 Bacteria Bacteria 160 2.52e-44   NR KRO73686.1 1655602 g4670 i0 98.8 1.97560975609756 81 1 98.8 0 2 244 251 331 KRO73686.1 MAG: hypothetical protein ABS00_04670, partial [Actinobacteria bacterium BACL2 MAG-120920-bin34] diamond 486 160 1 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinobacteria bacterium BACL2 MAG-120920-bin34

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;