RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA682774" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA682774 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27567606 27567606 PRJNA682774_P_NODE_4464_length_247_cov_0.896552_g4435_i0 PRJNA682774 4464 247 0.896552 2.21448344 Pseudomonadati 3379134 Bacteria Bacteria 118 5.769999999999999e-31   NR OLB07410.1 1805372 g4435 i0 68.8 4.96761133603239 80 25 97.2 0 243 4 19 98 OLB07410.1 MAG: hypothetical protein AUH14_03605 [Candidatus Rokubacteria bacterium 13_2_20CM_69_15_1] diamond 1227 118 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokubacteria bacterium 13_2_20CM_69_15_1
31757273 31757273 PRJNA682774_P_NODE_2817_length_276_cov_1.536946_g2788_i0 PRJNA682774 2817 276 1.536946 4.24197096 Patescibacteria group bacterium 2052139 Bacteria Bacteria 87.4 6.86e-20   NR MCL4419283.1 2052139 g2788 i0 49.5 1.01086956521739 93 27 83.7 2 254 24 1 89 MCL4419283.1 hypothetical protein [Patescibacteria group bacterium] diamond 279 87.4 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
32705668 32705668 PRJNA682774_P_NODE_5320_length_242_cov_1.846154_g5291_i0 PRJNA682774 5320 242 1.846154 4.46769268 Candidatus Poribacteria bacterium 2026781 Bacteria Bacteria 52.8 2.02e-6   NR MAT74171.1 2026781 g5291 i0 42.5 0.90495867768595 73 38 85.5 1 219 13 27 99 MAT74171.1 hypothetical protein [Candidatus Poribacteria bacterium] diamond 219 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         Candidatus Poribacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;