RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA682370" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 4 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA682370 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9592751 9592751 PRJNA682370_S_NODE_11868_length_210_cov_1.434286_g11256_i0 PRJNA682370 11868 210 1.434286 3.0120006 archaeon 1906665 Archaea Archaea 95.5 1.19e-22   NR MDP2438542.1 1906665 g11256 i0 64.3 1 70 25 100 0 210 1 100 169 MDP2438542.1 Ras-like protein [archaeon] diamond 210 95.5 1 Archaea               archaeon
26797300 26797300 PRJNA682370_S_NODE_8161_length_264_cov_1.205240_g7549_i0 PRJNA682370 8161 264 1.20524 3.1818336 archaeon 1906665 Archaea Archaea 83.6 1.27e-16   NR MCQ2815781.1 1906665 g7549 i0 48.7 0.886363636363636 78 39 88.6 1 244 11 145 221 MCQ2815781.1 thioredoxin domain-containing protein [archaeon] diamond 234 83.6 1 Archaea               archaeon
27082129 27082129 PRJNA682370_S_NODE_17282_length_172_cov_1.963504_g16670_i0 PRJNA682370 17282 172 1.963504 3.37722688 archaeon 1906665 Archaea Archaea 85.9 8.82e-18   NR MCQ2816260.1 1906665 g16670 i0 66.7 0.941860465116279 54 18 94.2 0 166 5 408 461 MCQ2816260.1 hypothetical protein [archaeon] diamond 162 85.9 1 Archaea               archaeon
31852044 31852044 PRJNA682370_S_NODE_11457_length_214_cov_2.256983_g10845_i0 PRJNA682370 11457 214 2.256983 4.82994362 Methanomicrobiales archaeon 2184052 Archaea Archaea 54.7 1.38e-6   NR MEI8332202.1 2184052 g10845 i0 56.4 0.546728971962617 39 17 54.7 0 80 196 133 171 MEI8332202.1 C1 family peptidase [Methanomicrobiales archaeon] diamond 117 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales     Methanomicrobiales archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;