RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA682370" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA682370 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19791357 19791357 PRJNA682370_S_NODE_3456_length_442_cov_3.412776_g2851_i0 PRJNA682370 3456 442 3.412776 15.08446992 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 143 4.84e-38   NR MCB0386755.1 2053517 g2851 i0 55.7 0.889140271493213 131 50 85.5 4 22 399 108 235 MCB0386755.1 C1 family peptidase [Bdellovibrionales bacterium] diamond 393 143 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
26892494 26892494 PRJNA682370_S_NODE_7101_length_286_cov_1.940239_g6489_i0 PRJNA682370 7101 286 1.940239 5.54908354 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 83.2 2.49e-16   NR MCB0386755.1 2053517 g6489 i0 44.1 0.975524475524476 93 46 93.4 4 267 1 266 356 MCB0386755.1 C1 family peptidase [Bdellovibrionales bacterium] diamond 279 83.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27871749 27871749 PRJNA682370_S_NODE_20885_length_159_cov_1.491935_g20273_i0 PRJNA682370 20885 159 1.491935 2.37217665 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 42.7 0.0122   NR MCB0386755.1 2053517 g20273 i0 65.5 0.547169811320755 29 10 54.7 0 129 43 28 56 MCB0386755.1 C1 family peptidase [Bdellovibrionales bacterium] diamond 87 42.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29639648 29639648 PRJNA682370_S_NODE_20430_length_160_cov_3.344000_g19818_i0 PRJNA682370 20430 160 3.344 5.3504 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 47.8 2.06e-4   NR MCB0386755.1 2053517 g19818 i0 57.1 0.65625 35 15 65.6 0 145 41 55 89 MCB0386755.1 C1 family peptidase [Bdellovibrionales bacterium] diamond 105 47.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;