RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA682370" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA682370 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31800330 31800330 PRJNA682370_S_NODE_2417_length_540_cov_10.069307_g1841_i0 PRJNA682370 2417 540 10.069307 54.3742578 Bacteria 2 Bacteria Bacteria 67 1.24e-10   NR MBI2066014.1 2026804 g1841 i0 58.3 0.672222222222222 60 24 32.8 1 365 189 3 62 MBI2066014.1 tryptophan-rich sensory protein [Candidatus Woesebacteria bacterium] diamond 363 67 1 Bacteria Bacteria candidate phyla   Candidatus Woeseibacteriota         Candidatus Woesebacteria bacterium
32358697 32358697 PRJNA682370_S_NODE_8039_length_266_cov_3.536797_g7427_i0 PRJNA682370 8039 266 3.536797 9.40788002 Patescibacteria group bacterium 2052139 Bacteria Bacteria 142 2.6799999999999993e-42   NR MEK7074395.1 2052139 g7427 i0 83.8 0.902255639097744 80 13 90.2 0 6 245 4 83 MEK7074395.1 hypothetical protein [Patescibacteria group bacterium] diamond 240 142 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;