contig_metadata
7 rows where analysis = "diamond", bioproject = "PRJNA682078" and tax_kingdom = "Orthornavirae"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1939967 | 1939967 | PRJNA682078_P_NODE_9502_length_1148_cov_2.478140_g8279_i0 | PRJNA682078 | 9502 | 1148 | 2.47814 | 28.4490472 | Gynostemma pentaphyllum secovirus | 2936688 | Viruses | Viruses | 597 | 9.059999999999999e-204 | NR | DAZ91066.1 | 2936688 | g8279 | i0 | 92.6 | 0.85191637630662 | 326 | 24 | 85.2 | 0 | 170 | 1147 | 1 | 326 | DAZ91066.1 TPA_asm: polyprotein [Gynostemma pentaphyllum secovirus] | diamond | 978 | 597 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Secoviridae | Fabavirus | Fabavirus gynostemmae | ||
| 26986996 | 26986996 | PRJNA682078_P_NODE_15222_length_883_cov_3.302469_g13799_i0 | PRJNA682078 | 15222 | 883 | 3.302469 | 29.16080127 | Gynostemma pentaphyllum secovirus | 2936688 | Viruses | Viruses | 578 | 1.2299999999999997e-197 | NR | DAZ91066.1 | 2936688 | g13799 | i0 | 98.9 | 0.958097395243488 | 282 | 3 | 95.8 | 0 | 881 | 36 | 719 | 1000 | DAZ91066.1 TPA_asm: polyprotein [Gynostemma pentaphyllum secovirus] | diamond | 846 | 578 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Secoviridae | Fabavirus | Fabavirus gynostemmae | ||
| 28818613 | 28818613 | PRJNA682078_P_NODE_160708_length_286_cov_3.352113_g158931_i0 | PRJNA682078 | 160708 | 286 | 3.352113 | 9.58704318 | Partitiviridae sp. | 1955170 | Viruses | Viruses | 95.5 | 1.36e-20 | NR | USE08423.1 | 1955170 | g158931 | i0 | 53.8 | 0.954545454545455 | 91 | 34 | 95.5 | 3 | 285 | 13 | 291 | 373 | USE08423.1 MAG: putative RNA-dependent RNA polymerase, partial [Partitiviridae sp.] | diamond | 273 | 95.5 | 1 | Viruses | Orthornavirae | Pisuviricota | Duplopiviricetes | Durnavirales | Partitiviridae | Partitiviridae sp. | |||
| 29135001 | 29135001 | PRJNA682078_P_NODE_9569_length_1144_cov_2.690009_g8342_i0 | PRJNA682078 | 9569 | 1144 | 2.690009 | 30.77370296 | Gynostemma pentaphyllum secovirus | 2936688 | Viruses | Viruses | 751 | 7.2299999999999995e-264 | NR | DAZ91066.1 | 2936688 | g8342 | i0 | 95.8 | 0.999125874125874 | 381 | 16 | 99.9 | 0 | 1 | 1143 | 351 | 731 | DAZ91066.1 TPA_asm: polyprotein [Gynostemma pentaphyllum secovirus] | diamond | 1143 | 751 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Secoviridae | Fabavirus | Fabavirus gynostemmae | ||
| 29198071 | 29198071 | PRJNA682078_P_NODE_97329_length_356_cov_1.049470_g95553_i0 | PRJNA682078 | 97329 | 356 | 1.04947 | 3.7361132 | Gynostemma pentaphyllum secovirus | 2936688 | Viruses | Viruses | 244 | 6.520000000000001e-73 | NR | DAZ91066.1 | 2936688 | g95553 | i0 | 99.2 | 0.99438202247191 | 118 | 1 | 99.4 | 0 | 355 | 2 | 878 | 995 | DAZ91066.1 TPA_asm: polyprotein [Gynostemma pentaphyllum secovirus] | diamond | 354 | 244 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Secoviridae | Fabavirus | Fabavirus gynostemmae | ||
| 29576519 | 29576519 | PRJNA682078_P_NODE_242770_length_248_cov_0.880000_g240993_i0 | PRJNA682078 | 242770 | 248 | 0.88 | 2.1824 | Sjack bromovirus | 3068463 | Viruses | Viruses | 90.1 | 8.53e-19 | NR | WPR17531.1 | 3068463 | g240993 | i0 | 50 | 0.991935483870968 | 82 | 41 | 99.2 | 0 | 246 | 1 | 86 | 167 | WPR17531.1 MAG: replicase protein, partial [Sjack bromovirus] | diamond | 246 | 90.1 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Alsuviricetes | Martellivirales | Bromoviridae | Bromovirus | Sjack bromovirus | ||
| 32136993 | 32136993 | PRJNA682078_P_NODE_257818_length_246_cov_0.890173_g256041_i0 | PRJNA682078 | 257818 | 246 | 0.890173 | 2.18982558 | Gynostemma pentaphyllum secovirus | 2936688 | Viruses | Viruses | 166 | 2.09e-45 | NR | DAZ91079.1 | 2936688 | g256041 | i0 | 95 | 0.975609756097561 | 80 | 4 | 97.6 | 0 | 5 | 244 | 1528 | 1607 | DAZ91079.1 TPA_asm: polyprotein [Gynostemma pentaphyllum secovirus] | diamond | 240 | 166 | 1 | Viruses | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Secoviridae | Fabavirus | Fabavirus gynostemmae |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;