RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA682078" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA682078 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27725965 27725965 PRJNA682078_P_NODE_232884_length_250_cov_0.870056_g231107_i0 PRJNA682078 232884 250 0.870056 2.17514 Bacteria 2 Bacteria Bacteria 68.2 4.68e-11   NR OQB11111.1 1852869 g231107 i0 50.6 3.768 79 35 94.8 2 246 10 811 885 OQB11111.1 MAG: FG-GAP repeat protein [Deltaproteobacteria bacterium ADurb.Bin207] diamond 942 68.6 0.994169096209913 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium ADurb.Bin207
31282702 31282702 PRJNA682078_P_NODE_248475_length_247_cov_0.885057_g246698_i0 PRJNA682078 248475 247 0.885057 2.18609079 Deltaproteobacteria bacterium ADurb.Bin2 2026735 Bacteria Bacteria 43.5 0.0194   NR OQB14652.1 1852869 g246698 i0 39.1 0.777327935222672 64 36 75.3 2 240 55 67 129 OQB14652.1 MAG: hypothetical protein BWY17_02441 [Deltaproteobacteria bacterium ADurb.Bin207] diamond 192 43.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium ADurb.Bin207

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;