RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA682078" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA682078 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6276351 6276351 PRJNA682078_P_NODE_177445_length_276_cov_1.517241_g175668_i0 PRJNA682078 177445 276 1.517241 4.18758516 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 84.7 1.46e-17   NR PRP88657.1 1890364 g175668 i0 77.6 0.532608695652174 49 11 53.3 0 130 276 48 96 PRP88657.1 putative RAC GTPase [Planoprotostelium fungivorum] diamond 147 84.7 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
15964449 15964449 PRJNA682078_P_NODE_265733_length_245_cov_0.895349_g263956_i0 PRJNA682078 265733 245 0.895349 2.19360505 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 72.8 1.02e-12   NR PRP87031.1 1890364 g263956 i0 52.6 2.93877551020408 78 36 95.5 1 10 243 2338 2414 PRP87031.1 hypothetical protein PROFUN_04767 [Planoprotostelium fungivorum] diamond 720 72.8 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32894516 32894516 PRJNA682078_P_NODE_232840_length_250_cov_0.870056_g231063_i0 PRJNA682078 232840 250 0.870056 2.17514 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 146 4.56e-41   NR PRP79382.1 1890364 g231063 i0 78 2.94 82 17 97.2 1 245 3 62 143 PRP79382.1 hypothetical protein PROFUN_12932, partial [Planoprotostelium fungivorum] diamond 735 146 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;