RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA681861" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA681861 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18509645 18509645 PRJNA681861_P_NODE_31535_length_208_cov_1.435754_g29435_i0 PRJNA681861 31535 208 1.435754 2.98636832 Phaffia rhodozyma 264483 Fungi Fungi 94.4 1.46e-22   NR CDZ98602.1 264483 g29435 i0 53.7 1.37019230769231 95 17 98.1 1 205 2 43 137 CDZ98602.1 40s ribosomal protein s26 [Phaffia rhodozyma] diamond 285 94.4 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Cystofilobasidiales Mrakiaceae Phaffia Phaffia rhodozyma
27176656 27176656 PRJNA681861_P_NODE_27422_length_235_cov_2.291262_g25322_i0 PRJNA681861 27422 235 2.291262 5.3844657 Phaffia rhodozyma 264483 Fungi Fungi 96.3 3.01e-22   NR CDZ96152.1 264483 g25322 i0 54.3 1.2 94 25 97 1 229 2 33 126 CDZ96152.1 cytochrome c oxidase subunit 2 [Phaffia rhodozyma] diamond 282 96.3 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Cystofilobasidiales Mrakiaceae Phaffia Phaffia rhodozyma
30935213 30935213 PRJNA681861_P_NODE_41674_length_179_cov_2.673333_g39574_i0 PRJNA681861 41674 179 2.673333 4.78526607 Phaffia rhodozyma 264483 Fungi Fungi 48.5 1.43e-4   NR AIP93875.1 264483 g39574 i0 79.3 0.972067039106145 29 6 48.6 0 89 175 53 81 AIP93875.1 cytochrome c oxidase subunit 1 [Phaffia rhodozyma] diamond 174 48.5 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Cystofilobasidiales Mrakiaceae Phaffia Phaffia rhodozyma

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;