RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA681822" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA681822 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30871852 30871852 PRJNA681822_P_NODE_350414_length_260_cov_1.647059_g348925_i0 PRJNA681822 350414 260 1.647059 4.2823534 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 114 1.67e-27   NR MFA5507699.1 3107663 g348925 i0 61.6 1.98461538461538 86 33 99.2 0 259 2 300 385 MFA5507699.1 aspartate aminotransferase family protein [Vulcanimicrobiota bacterium] diamond 516 114 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
31155895 31155895 PRJNA681822_P_NODE_257335_length_285_cov_1.089623_g255846_i0 PRJNA681822 257335 285 1.089623 3.10542555 Candidatus Velthaea sp. 3101115 Bacteria Bacteria 84 8.97e-18   NR MFN2460787.1 3101115 g255846 i0 54.1 3.81052631578947 85 38 88.4 1 13 264 42 126 MFN2460787.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD [Candidatus Velthaea sp.] diamond 1086 84 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Velthaea Candidatus Velthaea sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;