RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA681822" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA681822 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1170543 1170543 PRJNA681822_P_NODE_342741_length_262_cov_2.280423_g341252_i0 PRJNA681822 342741 262 2.280423 5.97470826 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 139 8.219999999999999e-40   NR AFX73059.1 1078836 g341252 i0 81.4 0.984732824427481 86 16 98.5 0 260 3 64 149 AFX73059.1 14-3-3 protein, partial [Cryptodifflugia operculata] diamond 258 139 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
30461580 30461580 PRJNA681822_P_NODE_380953_length_251_cov_1.730337_g379464_i0 PRJNA681822 380953 251 1.730337 4.34314587 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 61.6 9.72e-10   NR ABD72565.1 5778 g379464 i0 80 0.418326693227092 35 7 41.8 0 106 2 2 36 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 105 61.6 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;