RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA681822" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA681822 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27934898 27934898 PRJNA681822_P_NODE_340465_length_263_cov_1.621053_g338976_i0 PRJNA681822 340465 263 1.621053 4.26336939 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 151 3.2299999999999993e-40   NR WP_299075375.1 1678694 g338976 i0 95.2 0.958174904942966 84 4 95.8 0 11 262 234 317 WP_299075375.1 ferrous iron transport protein B [uncultured Fretibacterium sp.] diamond 252 151 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
30208067 30208067 PRJNA681822_P_NODE_227812_length_292_cov_2.059361_g226323_i0 PRJNA681822 227812 292 2.059361 6.01333412 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 178 8e-53   NR WP_299298551.1 1678694 g226323 i0 89.7 0.996575342465753 97 10 99.7 0 291 1 173 269 WP_299298551.1 endolytic transglycosylase MltG [uncultured Fretibacterium sp.] diamond 291 178 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
30461611 30461611 PRJNA681822_P_NODE_76573_length_433_cov_1.691667_g75095_i0 PRJNA681822 76573 433 1.691667 7.32491811 Synergistales bacterium 2268201 Bacteria Bacteria 62.8 2.84e-8   NR GHV34464.1 2268201 g75095 i0 68.3 0.893764434180139 41 13 28.4 0 306 428 4 44 GHV34464.1 hypothetical protein FACS1894187_05060 [Synergistales bacterium] diamond 387 62.8 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales     Synergistales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;