RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA681822" and tax_phylum = "Gastrotricha"

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tax_superkingdom 1

tax_phylum 1

  • Gastrotricha · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA681822 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
657218 657218 PRJNA681822_P_NODE_89761_length_407_cov_2.311377_g88279_i0 PRJNA681822 89761 407 2.311377 9.40730439 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 248 2.1800000000000003e-79   NR YP_009136570.1 1194616 g88279 i0 89.6 0.995085995085995 135 14 99.5 0 3 407 122 256 YP_009136570.1 cytochrome b [Lepidodermella squamata] diamond 405 248 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata
31314311 31314311 PRJNA681822_P_NODE_168295_length_328_cov_1.780392_g166807_i0 PRJNA681822 168295 328 1.780392 5.83968576 Litigonotus ghinii 3104745 Gastrotricha other_Eukaryota 116 6.9e-30   NR XCN99738.1 3104745 g166807 i0 71.3 0.859756097560976 94 27 86 0 2 283 17 110 XCN99738.1 ATP synthase F0 subunit 6 [Litigonotus ghinii] diamond 282 116 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Litigonotus Litigonotus ghinii
32611193 32611193 PRJNA681822_P_NODE_118600_length_369_cov_2.375000_g117113_i0 PRJNA681822 118600 369 2.375 8.76375 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 182 6.3e-53   NR YP_009136572.1 1194616 g117113 i0 96.8 0.772357723577236 95 3 77.2 0 1 285 153 247 YP_009136572.1 NADH dehydrogenase subunit 4 [Lepidodermella squamata] diamond 285 182 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;