RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA681822" and tax_phylum = "Artverviricota"

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tax_superkingdom 1

tax_phylum 1

  • Artverviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA681822 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2445752 2445752 PRJNA681822_P_NODE_2802_length_2220_cov_9.449930_g2353_i0 PRJNA681822 2802 2220 9.44993 209.788446 Moloney murine leukemia virus 11801 Viruses Viruses 1357 0   NR NP_057933.2 11801 g2353 i0 99.4 2.72432432432432 672 4 90.8 0 2150 135 658 1329 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 6048 1357 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
29324026 29324026 PRJNA681822_P_NODE_442969_length_245_cov_0.895349_g441480_i0 PRJNA681822 442969 245 0.895349 2.19360505 Caulimovirus sp. 2692413 Viruses Viruses 63.2 1.75e-9   NR XBU76865.1 2692413 g441480 i0 73.7 0.46530612244898 38 10 46.5 0 131 18 1 38 XBU76865.1 movement protein [Caulimovirus sp.] diamond 114 63.2 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;