RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA681822" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA681822 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27714256 27714256 PRJNA681822_P_NODE_433744_length_246_cov_0.890173_g432255_i0 PRJNA681822 433744 246 0.890173 2.18982558 Leptotrichia sp. oral taxon 215 712359 Bacteria Bacteria 110 1.17e-27   NR WP_036100436.1 712359 g432255 i0 66.7 0.98780487804878 81 27 98.8 0 2 244 121 201 WP_036100436.1 sulfurtransferase-like selenium metabolism protein YedF [Leptotrichia sp. oral taxon 215] diamond 243 110 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 215
30188435 30188435 PRJNA681822_P_NODE_414072_length_248_cov_0.880000_g412583_i0 PRJNA681822 414072 248 0.88 2.1824 Leptotrichiaceae 1129771 Bacteria Bacteria 123 8.97e-32   NR WP_026738206.1 157692 g412583 i0 77.6 2.74596774193548 76 17 91.9 0 248 21 92 167 WP_026738206.1 OmpA family protein [Pseudoleptotrichia goodfellowii] diamond 681 123 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia Pseudoleptotrichia goodfellowii
31377731 31377731 PRJNA681822_P_NODE_248776_length_287_cov_1.098131_g247287_i0 PRJNA681822 248776 287 1.098131 3.15163597 Leptotrichia wadei 157687 Bacteria Bacteria 131 6.72e-35   NR WP_018497865.1 157687 g247287 i0 67.4 1.98606271777003 95 31 99.3 0 287 3 124 218 WP_018497865.1 hypothetical protein [Leptotrichia wadei] diamond 570 131 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;