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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA680334" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA680334 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26701927 26701927 PRJNA680334_S_NODE_32041_length_220_cov_3.732620_g31555_i0 PRJNA680334 32041 220 3.73262 8.211764 Mus musculus 10090 Chordata Chordata 49.3 3.24e-5   NR EDL14396.1 10090 g31555 i0 57.4 0.640909090909091 47 19 64.1 1 203 63 57 102 EDL14396.1 mCG145954, partial [Mus musculus] diamond 141 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
26955223 26955223 PRJNA680334_S_NODE_26082_length_234_cov_9.835821_g25596_i0 PRJNA680334 26082 234 9.835821 23.01582114 Staurois parvus 386267 Chordata Chordata 51.6 1.73e-5   NR CAI9536211.1 386267 g25596 i0 51.8 1.93589743589744 56 20 62.8 3 49 195 170 225 CAI9536211.1 unnamed protein product [Staurois parvus] diamond 453 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
27176577 27176577 PRJNA680334_S_NODE_91782_length_158_cov_1.840000_g91296_i0 PRJNA680334 91782 158 1.84 2.9072 Mus musculus 10090 Chordata Chordata 50.4 2.24e-5   NR NP_001074891.1 10090 g91296 i0 84.6 0.987341772151899 52 8 98.7 0 2 157 491 542 NP_001074891.1 biorientation of chromosomes in cell division protein 1-like 1 isoform 1 [Mus musculus] diamond 156 50.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
28009918 28009918 PRJNA680334_S_NODE_41105_length_204_cov_2.233918_g40619_i0 PRJNA680334 41105 204 2.233918 4.55719272 Rodentia 9989 Chordata Chordata 102 3.049999999999999e-23   NR MBZ3891002.1 30640 g40619 i0 98.1 5.45588235294118 53 1 77.9 0 4 162 1090 1142 MBZ3891002.1 Leucine-rich repeat-containing protein 16C [Sciurus carolinensis] diamond 1113 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Sciurus Sciurus carolinensis
29967433 29967433 PRJNA680334_S_NODE_63031_length_178_cov_3.510345_g62545_i0 PRJNA680334 63031 178 3.510345 6.2484141 Rajidae 30475 Chordata Chordata 41.6 0.0392   NR XP_055487582.1 7782 g62545 i0 68 4.14606741573034 25 8 42.1 0 3 77 353 377 XP_055487582.1 uncharacterized protein LOC129694847 [Leucoraja erinaceus] diamond 738 42 0.990476190476191 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
30081790 30081790 PRJNA680334_S_NODE_64212_length_177_cov_3.062500_g63726_i0 PRJNA680334 64212 177 3.0625 5.420625 Ailuropoda melanoleuca 9646 Chordata Chordata 44.3 0.00441   NR EFB25329.1 9646 g63726 i0 49 0.830508474576271 49 22 79.7 2 34 174 131 178 EFB25329.1 hypothetical protein PANDA_022217, partial [Ailuropoda melanoleuca] diamond 147 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ailuropoda Ailuropoda melanoleuca
30113474 30113474 PRJNA680334_S_NODE_92252_length_157_cov_12.379032_g91766_i0 PRJNA680334 92252 157 12.379032 19.43508024 Rattus norvegicus 10116 Chordata Chordata 41.6 0.00611   NR EDL98840.1 10116 g91766 i0 88.5 0.496815286624204 26 3 49.7 0 91 14 1 26 EDL98840.1 acidic nuclear phosphoprotein 32 family, member B, isoform CRA_a [Rattus norvegicus] diamond 78 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
30239973 30239973 PRJNA680334_S_NODE_60132_length_181_cov_2.277027_g59646_i0 PRJNA680334 60132 181 2.277027 4.12141887 Phacochoerus africanus 41426 Chordata Chordata 45.4 0.00179   NR XP_047649697.1 41426 g59646 i0 59.4 0.530386740331492 32 13 53 0 64 159 269 300 XP_047649697.1 ras-related protein Rab-12 isoform X2 [Phacochoerus africanus] diamond 96 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Phacochoerus Phacochoerus africanus
30587337 30587337 PRJNA680334_S_NODE_63813_length_177_cov_7.055556_g63327_i0 PRJNA680334 63813 177 7.055556 12.48833412 Mus musculus 10090 Chordata Chordata 127 3.1499999999999993e-34   NR 4M69_A 10090 g63327 i0 100 2.89830508474576 57 0 96.6 0 171 1 236 292 4M69_A Chain A, Receptor-interacting serine/threonine-protein kinase 3 [Mus musculus] diamond 513 127 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
30682035 30682035 PRJNA680334_S_NODE_43013_length_201_cov_2.922619_g42527_i0 PRJNA680334 43013 201 2.922619 5.87446419 Balaenoptera physalus 9770 Chordata Chordata 42.7 0.00782   NR KAB0401909.1 9770 g42527 i0 53.2 1.22388059701493 47 18 67.2 2 139 5 13 57 KAB0401909.1 hypothetical protein E2I00_017869, partial [Balaenoptera physalus] diamond 246 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera physalus
31136062 31136062 PRJNA680334_S_NODE_25595_length_236_cov_2.837438_g25109_i0 PRJNA680334 25595 236 2.837438 6.69635368 Carnivora 33554 Chordata Chordata 62.8 2.99e-9   NR BAA25253.1 9615 g25109 i0 43.3 13.5 60 34 76.3 0 199 20 874 933 BAA25253.1 unnamed protein product [Canis lupus familiaris] diamond 3186 62.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
31978480 31978480 PRJNA680334_S_NODE_61118_length_180_cov_2.489796_g60632_i0 PRJNA680334 61118 180 2.489796 4.4816328 Equus caballus 9796 Chordata Chordata 58.5 4.19e-8   NR XP_070102340.1 9796 g60632 i0 70.5 0.733333333333333 44 13 73.3 0 138 7 78 121 XP_070102340.1 DNA excision repair protein ERCC-8 isoform X2 [Equus caballus] diamond 132 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
32073515 32073515 PRJNA680334_S_NODE_41618_length_203_cov_3.270588_g41132_i0 PRJNA680334 41618 203 3.270588 6.63929364 Suncus etruscus 109475 Chordata Chordata 42 0.0407   NR XP_049643246.1 109475 g41132 i0 38.8 0.724137931034483 49 27 68 1 186 49 50 98 XP_049643246.1 glutaminyl-peptide cyclotransferase-like protein [Suncus etruscus] diamond 147 42 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Suncus Suncus etruscus
32894389 32894389 PRJNA680334_S_NODE_67860_length_174_cov_2.666667_g67374_i0 PRJNA680334 67860 174 2.666667 4.64000058 Choloepus didactylus 27675 Chordata Chordata 58.9 1.84e-8   NR XP_037703436.1 27675 g67374 i0 94.3 0.603448275862069 35 2 60.3 0 172 68 216 250 XP_037703436.1 basic proline-rich protein-like [Choloepus didactylus] diamond 105 58.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pilosa Megalonychidae Choloepus Choloepus didactylus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;