RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA680334" and tax_phylum = "Candidatus Nomuraibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Nomuraibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA680334 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30567340 30567340 PRJNA680334_S_NODE_36093_length_212_cov_4.162011_g35607_i0 PRJNA680334 36093 212 4.162011 8.82346332 Bacteria 2 Bacteria Bacteria 125 1.8799999999999999e-31   NR MCB9811196.1 2052152 g35607 i0 81.4 1.9811320754717 70 13 99.1 0 2 211 708 777 MCB9811196.1 ATP-dependent Clp protease ATP-binding subunit [Candidatus Nomurabacteria bacterium] diamond 420 125 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium
30998300 30998300 PRJNA680334_S_NODE_94694_length_156_cov_3.300813_g94208_i0 PRJNA680334 94694 156 3.300813 5.14926828 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 102 3.94e-24   NR USN87828.1 2052152 g94208 i0 86 2.86538461538462 50 7 96.2 0 2 151 46 95 USN87828.1 MAG: DUF4215 domain-containing protein [Candidatus Nomurabacteria bacterium] diamond 447 102 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium
31504235 31504235 PRJNA680334_S_NODE_50536_length_191_cov_3.620253_g50050_i0 PRJNA680334 50536 191 3.620253 6.91468323 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 53.1 3.91e-6   NR MCB9810901.1 2052152 g50050 i0 44.6 0.879581151832461 56 31 88 0 186 19 150 205 MCB9810901.1 insulinase family protein [Candidatus Nomurabacteria bacterium] diamond 168 53.1 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;