RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA680334" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA680334 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15197922 15197922 PRJNA680334_S_NODE_71012_length_171_cov_7.123188_g70526_i0 PRJNA680334 71012 171 7.123188 12.18065148 Fusobacterium perfoetens 852 Bacteria Bacteria 75.5 3.22e-14   NR WP_027129485.1 852 g70526 i0 76.8 0.982456140350877 56 13 98.2 0 170 3 75 130 WP_027129485.1 molecular chaperone DnaJ [Fusobacterium perfoetens] diamond 168 75.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium perfoetens
29008639 29008639 PRJNA680334_S_NODE_81968_length_164_cov_1.282443_g81482_i0 PRJNA680334 81968 164 1.282443 2.10320652 Fusobacterium 848 Bacteria Bacteria 106 5.420000000000001e-26   NR WP_235247271.1 848 g81482 i0 100 0.98780487804878 54 0 98.8 0 164 3 73 126 WP_235247271.1 MULTISPECIES: ATPase [Fusobacterium] diamond 162 106 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium  
30176658 30176658 PRJNA680334_S_NODE_7652_length_340_cov_2.638436_g7166_i0 PRJNA680334 7652 340 2.638436 8.9706824 Fusobacterium perfoetens 852 Bacteria Bacteria 214 6.15e-63   NR WP_235244275.1 852 g7166 i0 99.1 0.988235294117647 112 1 98.8 0 338 3 451 562 WP_235244275.1 ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium perfoetens] diamond 336 214 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium perfoetens
31535923 31535923 PRJNA680334_S_NODE_82636_length_163_cov_3.646154_g82150_i0 PRJNA680334 82636 163 3.646154 5.94323102 Fusobacterium necrophorum 859 Bacteria Bacteria 43.5 0.00148   NR WP_187105728.1 859 g82150 i0 71.4 1.58282208588957 28 8 51.5 0 138 55 33 60 WP_187105728.1 hypothetical protein, partial [Fusobacterium necrophorum] diamond 258 43.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;