RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA675638" and tax_kingdom = "Thermoproteati"

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tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 3 ✖

bioproject 1

  • PRJNA675638 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28060969 28060969 PRJNA675638_P_NODE_14425_length_189_cov_0.935714_g14228_i0 PRJNA675638 14425 189 0.935714 1.76849946 Nitrosopumilus sp. 2024843 Archaea Archaea 41.6 0.0444   NR WP_299291794.1 2024843 g14228 i0 44.2 0.682539682539683 43 23 66.7 1 2 127 100 142 WP_299291794.1 LlaMI family restriction endonuclease [Nitrosopumilus sp.] diamond 129 41.6 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
29040074 29040074 PRJNA675638_P_NODE_17908_length_168_cov_1.285714_g17711_i0 PRJNA675638 17908 168 1.285714 2.15999952 Nitrosopumilaceae archaeon 2202732 Archaea Archaea 77 3.99e-15   NR MDX1532672.1 2202732 g17711 i0 66.7 0.964285714285714 54 18 96.4 0 6 167 107 160 MDX1532672.1 zeta toxin family protein [Nitrosopumilaceae archaeon] diamond 162 77 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae   Nitrosopumilaceae archaeon
29987177 29987177 PRJNA675638_P_NODE_12251_length_203_cov_1.532468_g12054_i0 PRJNA675638 12251 203 1.532468 3.11091004 Candidatus Bathyarchaeota archaeon 2026714 Archaea Archaea 42 0.0339   NR PMB74857.1 2026714 g12054 i0 37.7 1.01970443349754 69 33 87.2 1 14 190 66 134 PMB74857.1 MAG: hypothetical protein C0195_00575 [Candidatus Bathyarchaeota archaeon] diamond 207 42 1 Archaea   Thermoproteati Candidatus Bathyarchaeota         Candidatus Bathyarchaeota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;