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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA675331" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA675331 · 11 ✖

analysis 1

  • diamond · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27208120 27208120 PRJNA675331_P_NODE_18082_length_251_cov_0.865169_g17910_i0 PRJNA675331 18082 251 0.865169 2.17157419 Streptosporangiaceae bacterium 2339230 Bacteria Bacteria 43.5 0.0201   NR HTP15401.1 2339230 g17910 i0 36.2 0.824701195219124 69 38 75.3 1 234 46 55 123 HTP15401.1 hypothetical protein [Streptosporangiaceae bacterium] diamond 207 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae   Streptosporangiaceae bacterium
27271561 27271561 PRJNA675331_P_NODE_24283_length_241_cov_0.916667_g24111_i0 PRJNA675331 24283 241 0.916667 2.20916747 Microbacterium oxydans 82380 Bacteria Bacteria 125 2.49e-31   NR WP_206516629.1 82380 g24111 i0 86.1 3.85892116182573 79 11 98.3 0 241 5 528 606 WP_206516629.1 excinuclease ABC subunit UvrB [Microbacterium oxydans] diamond 930 125 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium oxydans
27555651 27555651 PRJNA675331_P_NODE_7204_length_362_cov_1.055363_g7032_i0 PRJNA675331 7204 362 1.055363 3.82041406 Jiangellales bacterium 3050264 Bacteria Bacteria 92.4 1.69e-20   NR HSK55743.1 3050264 g7032 i0 42 2.9585635359116 119 63 98.6 2 362 6 85 197 HSK55743.1 fasciclin domain-containing protein [Jiangellales bacterium] diamond 1071 92.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Jiangellales     Jiangellales bacterium
28534865 28534865 PRJNA675331_P_NODE_21807_length_245_cov_0.895349_g21635_i0 PRJNA675331 21807 245 0.895349 2.19360505 Streptomyces collinus 42684 Bacteria Bacteria 42.7 0.0261   NR WP_390932176.1 42684 g21635 i0 43.8 0.587755102040816 48 27 58.8 0 236 93 92 139 WP_390932176.1 EF-hand domain-containing protein [Streptomyces collinus] diamond 144 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces collinus
29051853 29051853 PRJNA675331_P_NODE_9848_length_317_cov_0.946721_g9676_i0 PRJNA675331 9848 317 0.946721 3.00110557 Bacteria 2 Bacteria Bacteria 57.8 4.49e-7   NR WP_396447953.1 1989 g9676 i0 74.2 0.861198738170347 31 8 29.3 0 5 97 441 471 WP_396447953.1 agmatine deiminase family protein [Actinomadura sp.] diamond 273 57.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura sp.
29229506 29229506 PRJNA675331_P_NODE_22009_length_244_cov_1.157895_g21837_i0 PRJNA675331 22009 244 1.157895 2.8252638 Nakamurella sp. 1869182 Bacteria Bacteria 40.8 0.0462   NR MET0864341.1 1869182 g21837 i0 41.8 0.676229508196721 55 31 66.4 1 52 213 8 62 MET0864341.1 Rv2175c family DNA-binding protein [Nakamurella sp.] diamond 165 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Nakamurellales Nakamurellaceae Nakamurella Nakamurella sp.
29576351 29576351 PRJNA675331_P_NODE_6570_length_377_cov_1.516447_g6398_i0 PRJNA675331 6570 377 1.516447 5.71700519 Actinomycetota bacterium 2900548 Bacteria Bacteria 57.4 1.22e-6   NR MDQ3177983.1 2900548 g6398 i0 36.3 1.77453580901857 113 66 85.1 3 374 54 33 145 MDQ3177983.1 tandem-95 repeat protein [Actinomycetota bacterium] diamond 669 57.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30935099 30935099 PRJNA675331_P_NODE_13434_length_279_cov_1.868932_g13262_i0 PRJNA675331 13434 279 1.868932 5.21432028 Streptosporangium saharense 1706840 Bacteria Bacteria 43.1 0.0406   NR WP_184720287.1 1706840 g13262 i0 31.5 0.78494623655914 73 50 78.5 0 258 40 164 236 WP_184720287.1 ABC transporter ATP-binding protein [Streptosporangium saharense] diamond 219 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Streptosporangium Streptosporangium saharense
31199130 31199130 PRJNA675331_P_NODE_8615_length_335_cov_0.965649_g8443_i0 PRJNA675331 8615 335 0.965649 3.23492415 root 1 Root_unresolved Root_unresolved 95.9 8.35e-21   NR WP_119836457.1 1654 g8443 i0 42.3 4.95223880597015 111 64 99.4 0 335 3 56 166 WP_119836457.1 MULTISPECIES: Gfo/Idh/MocA family oxidoreductase [Actinomyces] diamond 1659 96.7 0.991726990692865 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces  
31693777 31693777 PRJNA675331_P_NODE_15077_length_271_cov_0.803030_g14905_i0 PRJNA675331 15077 271 0.80303 2.1762113 Streptomyces sp. HUAS MG91 3156398 Bacteria Bacteria 42.7 0.0475   NR WP_353944426.1 3156398 g14905 i0 39.2 0.874538745387454 79 43 81.9 2 18 239 185 263 WP_353944426.1 DUF1648 domain-containing protein [Streptomyces sp. HUAS MG91] diamond 237 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces tabacisoli
32780167 32780167 PRJNA675331_P_NODE_23580_length_242_cov_0.911243_g23408_i0 PRJNA675331 23580 242 0.911243 2.20520806 root 1 Root_unresolved Root_unresolved 50.4 3.95e-6   NR WP_393231945.1 1932 g23408 i0 43.4 1.68595041322314 53 30 65.7 0 216 58 11 63 WP_393231945.1 ubiquitin-like domain-containing protein [Streptomyces tendae] diamond 408 50.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces tendae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;