RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA675331" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA675331 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27839834 27839834 PRJNA675331_P_NODE_8424_length_338_cov_1.120755_g8252_i0 PRJNA675331 8424 338 1.120755 3.7881519 Candidatus Nealsonbacteria bacterium 2093793 Bacteria Bacteria 45.4 0.0112   NR MBI2041834.1 2093793 g8252 i0 28.7 0.896449704142012 101 48 87 3 36 329 145 224 MBI2041834.1 hypothetical protein [Candidatus Nealsonbacteria bacterium] diamond 303 45.4 1 Bacteria Bacteria candidate phyla   Candidatus Nealsoniibacteriota         Candidatus Nealsonbacteria bacterium
27934825 27934825 PRJNA675331_P_NODE_725_length_1041_cov_1.518595_g607_i0 PRJNA675331 725 1041 1.518595 15.80857395 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 52.8 0.00199   NR MFH1284914.1 2030811 g607 i0 39.2 0.213256484149856 74 44 21.3 1 654 433 552 624 MFH1284914.1 hypothetical protein [Candidatus Peregrinibacteria bacterium] diamond 222 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium
28440057 28440057 PRJNA675331_P_NODE_24026_length_241_cov_0.916667_g23854_i0 PRJNA675331 24026 241 0.916667 2.20916747 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 43.1 0.0254   NR MBR6168849.1 2026720 g23854 i0 33.3 1.00829875518672 81 45 93.4 2 227 3 297 374 MBR6168849.1 flippase [Candidatus Saccharibacteria bacterium] diamond 243 43.1 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
30018905 30018905 PRJNA675331_P_NODE_21771_length_245_cov_0.895349_g21599_i0 PRJNA675331 21771 245 0.895349 2.19360505 Minisyncoccota bacterium 2053589 Bacteria Bacteria 48.5 3.58e-4   NR MEZ0208986.1 2053589 g21599 i0 70 0.36734693877551 30 9 36.7 0 2 91 1454 1483 MEZ0208986.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 90 48.5 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;