RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA675042" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA675042 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28755582 28755582 PRJNA675042_P_NODE_131867_length_248_cov_0.880000_g131417_i0 PRJNA675042 131867 248 0.88 2.1824 Leptospira interrogans serovar Copenhageni/Icterohaemorrhagiae 766041 Bacteria Bacteria 40 0.0404   NR APH42396.1 766041 g131417 i0 43.1 0.616935483870968 51 24 61.7 2 205 53 1 46 APH42396.1 Uncharacterized protein A9P81_2809 [Leptospira interrogans serovar Copenhageni/Icterohaemorrhagiae] diamond 153 40 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira interrogans
32717341 32717341 PRJNA675042_P_NODE_100040_length_258_cov_0.891892_g99590_i0 PRJNA675042 100040 258 0.891892 2.30108136 Bacteria 2 Bacteria Bacteria 44.3 0.013   NR MCS6984380.1 2026757 g99590 i0 69 0.674418604651163 29 9 33.7 0 136 222 74 102 MCS6984380.1 translation elongation factor 4 [Leptospiraceae bacterium] diamond 174 44.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;