RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA675042" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA675042 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
646649 646649 PRJNA675042_P_NODE_2361_length_869_cov_5.459799_g1996_i0 PRJNA675042 2361 869 5.459799 47.44565331 Campylobacter jejuni 197 Bacteria Bacteria 132 1.48e-35   NR MBP0443134.1 197 g1996 i0 100 0.238204833141542 69 0 23.8 0 614 408 1 69 MBP0443134.1 hypothetical protein [Campylobacter jejuni] diamond 207 132 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
29797425 29797425 PRJNA675042_P_NODE_172011_length_242_cov_0.911243_g171561_i0 PRJNA675042 172011 242 0.911243 2.20520806 Campylobacterota bacterium 2026809 Bacteria Bacteria 44.3 0.0105   NR MEA1918603.1 2026809 g171561 i0 54.8 0.520661157024793 42 16 50.8 2 25 147 210 249 MEA1918603.1 sensor histidine kinase [Campylobacterota bacterium] diamond 126 44.3 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
32116992 32116992 PRJNA675042_P_NODE_161378_length_243_cov_0.905882_g160928_i0 PRJNA675042 161378 243 0.905882 2.20129326 Pseudomonadati 3379134 Bacteria Bacteria 164 6.56e-51   NR WP_209379118.1 197 g160928 i0 100 2.96296296296296 80 0 98.8 0 241 2 10 89 WP_209379118.1 hypothetical protein, partial [Campylobacter jejuni] diamond 720 164 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;