RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA675042" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA675042 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26892233 26892233 PRJNA675042_P_NODE_182441_length_201_cov_3.189781_g181991_i0 PRJNA675042 182441 201 3.189781 6.41145981 Candidatus Acidiferrum sp. 3069120 Bacteria Bacteria 40.8 0.034   NR HXD81693.1 3069120 g181991 i0 32.8 0.865671641791045 58 27 68.7 1 37 174 18 75 HXD81693.1 hypothetical protein [Candidatus Acidiferrum sp.] diamond 174 40.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales   Candidatus Acidiferrum Candidatus Acidiferrum sp.
28167647 28167647 PRJNA675042_P_NODE_13225_length_460_cov_3.875969_g12775_i0 PRJNA675042 13225 460 3.875969 17.8294574 Chloracidobacterium 458032 Bacteria Bacteria 110 5.74e-28   NR WP_014100516.1 458032 g12775 i0 94.9 0.769565217391304 59 3 38.5 0 21 197 78 136 WP_014100516.1 MULTISPECIES: NADH-quinone oxidoreductase subunit NuoK [Chloracidobacterium] diamond 354 110 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Chloracidobacterium  
31029975 31029975 PRJNA675042_P_NODE_175895_length_241_cov_0.916667_g175445_i0 PRJNA675042 175895 241 0.916667 2.20916747 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 45.4 0.00155   NR HEX2121681.1 2651171 g175445 i0 40 0.933609958506224 75 31 84.6 3 4 207 35 102 HEX2121681.1 hypothetical protein [Thermoanaerobaculia bacterium] diamond 225 45.4 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
31693674 31693674 PRJNA675042_P_NODE_11597_length_479_cov_6.325123_g11148_i0 PRJNA675042 11597 479 6.325123 30.29733917 Terriglobales bacterium 2282142 Bacteria Bacteria 66.2 2.99e-9   NR HLX85138.1 2282142 g11148 i0 39.5 1.06471816283925 86 52 53.9 0 47 304 390 475 HLX85138.1 hypothetical protein [Terriglobales bacterium] diamond 510 66.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;