RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA675042" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA675042 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26828901 26828901 PRJNA675042_P_NODE_9441_length_511_cov_0.840183_g8994_i0 PRJNA675042 9441 511 0.840183 4.29333513 Picochlorum sp. BPE23 2696299 Plants Plants 110 1.43e-25   NR KAI8107375.1 2696299 g8994 i0 39.6 1.98434442270059 169 102 99.2 0 509 3 101 269 KAI8107375.1 hypothetical protein M9435_002406 [Picochlorum sp. BPE23] diamond 1014 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23
29241124 29241124 PRJNA675042_P_NODE_36469_length_353_cov_0.821429_g36019_i0 PRJNA675042 36469 353 0.821429 2.89964437 Eukaryota 2759 Plants Plants 71.6 1.05e-11   NR XP_011399604.1 3075 g36019 i0 73.9 66.4589235127479 46 12 39.1 0 4 141 513 558 XP_011399604.1 Pre-mRNA-processing-splicing factor 8 [Auxenochlorella protothecoides] diamond 23460 72 0.994444444444444 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
31547653 31547653 PRJNA675042_P_NODE_80096_length_281_cov_0.860577_g79646_i0 PRJNA675042 80096 281 0.860577 2.41822137 Eukaryota 2759 Plants Plants 100 4.1500000000000003e-22   NR KAF5834341.1 3046 g79646 i0 60.5 99.8007117437722 76 30 81.1 0 1 228 516 591 KAF5834341.1 splicing factor, component of the U5 snRNP and of the spliceosome [Dunaliella salina] diamond 28044 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;