RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA674308" and tax_phylum = "Candidatus Melainabacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Melainabacteria · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA674308 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28724011 28724011 PRJNA674308_P_NODE_48627_length_164_cov_0.904348_g48392_i0 PRJNA674308 48627 164 0.904348 1.48313072 Candidatus Obscuribacterales bacterium 2364082 Bacteria Bacteria 99 1.5099999999999998e-23   NR MDR3615957.1 2364082 g48392 i0 92.6 0.98780487804878 54 4 98.8 0 2 163 143 196 MDR3615957.1 SDR family oxidoreductase [Candidatus Obscuribacterales bacterium] diamond 162 99 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Candidatus Melainabacteria   Candidatus Obscuribacterales     Candidatus Obscuribacterales bacterium
31092861 31092861 PRJNA674308_P_NODE_37675_length_168_cov_2.184874_g37440_i0 PRJNA674308 37675 168 2.184874 3.67058832 Candidatus Melainabacteria bacterium GWF2_37_15 1801606 Bacteria Bacteria 61.6 2.84e-9   NR OGI00366.1 1801606 g37440 i0 55.8 1.67857142857143 52 23 92.9 0 167 12 275 326 OGI00366.1 MAG: glutamate-5-semialdehyde dehydrogenase [Candidatus Melainabacteria bacterium GWF2_37_15] diamond 282 61.6 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Candidatus Melainabacteria         Candidatus Melainabacteria bacterium GWF2_37_15
32799723 32799723 PRJNA674308_P_NODE_32760_length_177_cov_1.218750_g32525_i0 PRJNA674308 32760 177 1.21875 2.1571875 Candidatus Gastranaerophilales bacterium 2137880 Bacteria Bacteria 42 0.0283   NR MCD8024556.1 2137880 g32525 i0 45.7 0.593220338983051 35 19 59.3 0 72 176 103 137 MCD8024556.1 molecular chaperone DnaJ [Candidatus Gastranaerophilales bacterium] diamond 105 42 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Candidatus Melainabacteria   Candidatus Gastranaerophilales     Candidatus Gastranaerophilales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;