RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA674308" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA674308 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26682103 26682103 PRJNA674308_P_NODE_20261_length_219_cov_0.917647_g20026_i0 PRJNA674308 20261 219 0.917647 2.00964693 Thermotoga 2335 Bacteria Bacteria 102 3.6e-23   NR WP_038066611.1 2337 g20026 i0 63.9 6.9041095890411 72 26 98.6 0 217 2 252 323 WP_038066611.1 pyruvate, phosphate dikinase [Thermotoga neapolitana] diamond 1512 102 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga neapolitana
30061935 30061935 PRJNA674308_P_NODE_10871_length_290_cov_1.294606_g10636_i0 PRJNA674308 10871 290 1.294606 3.7543574 Bacteria 2 Bacteria Bacteria 62.8 5.93e-9   NR WP_075831758.1 249408 g10636 i0 46 2.06896551724138 63 30 61 1 108 284 243 305 WP_075831758.1 beta-mannosidase [Deinococcus marmoris] diamond 600 62.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus marmoris
32053531 32053531 PRJNA674308_P_NODE_26638_length_194_cov_1.482759_g26403_i0 PRJNA674308 26638 194 1.482759 2.87655246 root 1 Root_unresolved Root_unresolved 49.7 6.89e-5   NR WP_074199946.1 49896 g26403 i0 62.8 2.67525773195876 43 15 66.5 1 64 192 8 49 WP_074199946.1 dipeptidase [Acetomicrobium flavidum] diamond 519 50.1 0.992015968063872 Bacteria   Thermotogati Synergistota Synergistia Synergistales Acetomicrobiaceae Acetomicrobium Acetomicrobium flavidum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;