RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA674308" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA674308 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12124170 12124170 PRJNA674308_P_NODE_46390_length_165_cov_0.896552_g46155_i0 PRJNA674308 46390 165 0.896552 1.4793108 Halobacteriales archaeon QH_6_64_2 1904752 Archaea Archaea 102 2.75e-24   NR PSP42842.1 1919154 g46155 i0 92.6 1.96363636363636 54 4 98.2 0 2 163 211 264 PSP42842.1 MAG: 1,4-dihydroxy-2-naphthoyl-CoA synthase [Halobacteriales archaeon QH_6_64_20] diamond 324 102 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales     Halobacteriales archaeon QH_6_64_20
26892140 26892140 PRJNA674308_P_NODE_11661_length_280_cov_1.770563_g11426_i0 PRJNA674308 11661 280 1.770563 4.9575764 Thermoplasmata archaeon 1906666 Archaea Archaea 51.6 4.6e-5   NR MEM3493765.1 1906666 g11426 i0 30.1 1.99285714285714 93 62 99.6 1 1 279 174 263 MEM3493765.1 S8 family serine peptidase [Thermoplasmata archaeon] diamond 558 51.6 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
27902864 27902864 PRJNA674308_P_NODE_52445_length_162_cov_0.920354_g52210_i0 PRJNA674308 52445 162 0.920354 1.49097348 Methanosarcinales archaeon 2250255 Archaea Archaea 44.7 9.84e-4   NR RYE84884.1 2250255 g52210 i0 54.5 0.611111111111111 33 15 61.1 0 101 3 70 102 RYE84884.1 MAG: hypothetical protein EOO65_01455 [Methanosarcinales archaeon] diamond 99 44.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
28566051 28566051 PRJNA674308_P_NODE_37647_length_168_cov_2.621849_g37412_i0 PRJNA674308 37647 168 2.621849 4.40470632 Thermoplasmata archaeon 1906666 Archaea Archaea 82.4 1.38e-16   NR RLF33997.1 1906666 g37412 i0 68.5 1.94642857142857 54 17 96.4 0 6 167 198 251 RLF33997.1 MAG: pyruvate, phosphate dikinase, partial [Thermoplasmata archaeon] diamond 327 82.4 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
29323783 29323783 PRJNA674308_P_NODE_31949_length_179_cov_1.584615_g31714_i0 PRJNA674308 31949 179 1.584615 2.83646085 Methanobacteriota archaeon 2026739 Archaea Archaea 90.5 2.36e-19   NR GIS49827.1 2026739 g31714 i0 67.8 2.96648044692737 59 19 98.9 0 2 178 275 333 GIS49827.1 MAG: hypothetical protein Ct9H90mP24_1190 [Methanobacteriota archaeon] diamond 531 90.5 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
29335801 29335801 PRJNA674308_P_NODE_14869_length_250_cov_2.786070_g14634_i0 PRJNA674308 14869 250 2.78607 6.965175 root 1 Root_unresolved Root_unresolved 100 3.4e-23   NR MBU38126.1 2026739 g14634 i0 59.8 5.16 87 23 90 2 248 24 222 308 MBU38126.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS [Methanobacteriota archaeon] diamond 1290 100 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
30524092 30524092 PRJNA674308_P_NODE_14373_length_254_cov_1.770732_g14138_i0 PRJNA674308 14373 254 1.770732 4.49765928 Methanosarcinales archaeon 2250255 Archaea Archaea 84 1.02e-16   NR RYE83132.1 2250255 g14138 i0 52.2 0.81496062992126 69 33 81.5 0 253 47 130 198 RYE83132.1 MAG: hypothetical protein EOO65_04430, partial [Methanosarcinales archaeon] diamond 207 84 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
31673836 31673836 PRJNA674308_P_NODE_49997_length_163_cov_0.912281_g49762_i0 PRJNA674308 49997 163 0.912281 1.48701803 Halobacterium 2239 Archaea Archaea 76.3 5.67e-15   NR WP_157499861.1 2668074 g49762 i0 70.4 1.98773006134969 54 16 99.4 0 1 162 135 188 WP_157499861.1 DUF7260 family protein [Halobacterium sp. CBA1126] diamond 324 76.6 0.996083550913838 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium sp. CBA1126

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;