RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA674050" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA674050 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27144563 27144563 PRJNA674050_P_NODE_30302_length_247_cov_0.896552_g30099_i0 PRJNA674050 30302 247 0.896552 2.21448344 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 102 5.5e-23   NR MCX6971249.1 2026799 g30099 i0 67.1 0.923076923076923 76 25 92.3 0 229 2 465 540 MCX6971249.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 228 102 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28155783 28155783 PRJNA674050_P_NODE_27165_length_249_cov_0.886364_g26962_i0 PRJNA674050 27165 249 0.886364 2.20704636 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 72.4 1.35e-12   NR MBI5773599.1 2026799 g26962 i0 79.1 0.518072289156627 43 9 51.8 0 248 120 145 187 MBI5773599.1 DUF1080 domain-containing protein [Verrucomicrobiota bacterium] diamond 129 72.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28850062 28850062 PRJNA674050_P_NODE_26148_length_250_cov_0.875706_g25945_i0 PRJNA674050 26148 250 0.875706 2.189265 Phragmitibacter flavus 2576071 Bacteria Bacteria 161 2.31e-47   NR WP_138087427.1 2576071 g25945 i0 91.5 0.984 82 7 98.4 0 248 3 156 237 WP_138087427.1 TatD family hydrolase [Phragmitibacter flavus] diamond 246 161 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Phragmitibacter Phragmitibacter flavus
29418441 29418441 PRJNA674050_P_NODE_8169_length_314_cov_1.253112_g7966_i0 PRJNA674050 8169 314 1.253112 3.93477168 Lacunisphaera sp. 1961806 Bacteria Bacteria 66.6 6.77e-11   NR HEX2861528.1 1961806 g7966 i0 50 0.764331210191083 80 39 76.4 1 73 312 23 101 HEX2861528.1 hypothetical protein [Lacunisphaera sp.] diamond 240 66.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera sp.
31788321 31788321 PRJNA674050_P_NODE_20657_length_256_cov_2.972678_g20454_i0 PRJNA674050 20657 256 2.972678 7.61005568 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 50.8 3.77e-6   NR MDF1659962.1 2026801 g20454 i0 33.3 1.51171875 66 44 77.3 0 227 30 4 69 MDF1659962.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 387 50.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;