RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA674050" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA674050 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27176391 27176391 PRJNA674050_P_NODE_29862_length_247_cov_1.603448_g29659_i0 PRJNA674050 29862 247 1.603448 3.96051656 Octopus vulgaris 6645 Mollusca Mollusca 42.4 0.0153   NR CAI9717742.1 6645 g29659 i0 52.8 0.437246963562753 36 17 43.7 0 153 46 20 55 CAI9717742.1 Hypothetical predicted protein [Octopus vulgaris] diamond 108 42.4 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus vulgaris
29481405 29481405 PRJNA674050_P_NODE_41270_length_229_cov_4.282051_g41067_i0 PRJNA674050 41270 229 4.282051 9.80589679 Potamilus streckersoni 2493646 Mollusca Mollusca 70.5 4.45e-13   NR KAK3580124.1 2493646 g41067 i0 56.3 1.67685589519651 64 28 83.8 0 229 38 82 145 KAK3580124.1 hypothetical protein CHS0354_034064 [Potamilus streckersoni] diamond 384 70.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Unionida Unionidae Potamilus Potamilus streckersoni
30903318 30903318 PRJNA674050_P_NODE_23114_length_252_cov_0.871508_g22911_i0 PRJNA674050 23114 252 0.871508 2.19620016 Pinctada imbricata 66713 Mollusca Mollusca 123 1.7299999999999998e-31   NR KAK3083065.1 66713 g22911 i0 71.1 4.96428571428571 83 24 98.8 0 4 252 8 90 KAK3083065.1 hypothetical protein FSP39_012975 [Pinctada imbricata] diamond 1251 123 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pterioida Pteriidae Pinctada Pinctada imbricata
31218822 31218822 PRJNA674050_P_NODE_22875_length_252_cov_0.871508_g22672_i0 PRJNA674050 22875 252 0.871508 2.19620016 Octopus vulgaris 6645 Mollusca Mollusca 94.4 4.27e-21   NR CAI9715052.1 6645 g22672 i0 70.1 1.5952380952381 67 20 79.8 0 50 250 23 89 CAI9715052.1 Hypothetical predicted protein [Octopus vulgaris] diamond 402 94.4 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;