RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA674050" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA674050 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22321062 22321062 PRJNA674050_P_NODE_25018_length_251_cov_0.865169_g24815_i0 PRJNA674050 25018 251 0.865169 2.17157419 Longimicrobium 1804994 Bacteria Bacteria 134 2.53e-36   NR CAA9356552.1 203437 g24815 i0 73.5 2.95219123505976 83 22 99.2 0 2 250 174 256 CAA9356552.1 MAG: Glyoxalase family protein [uncultured Gemmatimonadota bacterium] diamond 741 135 0.992592592592593 Bacteria FCB group Pseudomonadati Gemmatimonadota         uncultured Gemmatimonadota bacterium
27599381 27599381 PRJNA674050_P_NODE_23624_length_252_cov_0.865922_g23421_i0 PRJNA674050 23624 252 0.865922 2.18212344 Bacteria 2 Bacteria Bacteria 103 1.87e-25   NR MBS1240794.1 2026742 g23421 i0 80.3 5.80952380952381 61 12 72.6 0 8 190 128 188 MBS1240794.1 hypothetical protein [Gemmatimonadota bacterium] diamond 1464 103 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29355535 29355535 PRJNA674050_P_NODE_39109_length_242_cov_0.923077_g38906_i0 PRJNA674050 39109 242 0.923077 2.23384634 Longimicrobium sp. 2029185 Bacteria Bacteria 120 2.7599999999999996e-31   NR HEX8212551.1 2029185 g38906 i0 78.5 0.979338842975207 79 17 97.9 0 6 242 113 191 HEX8212551.1 hypothetical protein [Longimicrobium sp.] diamond 237 120 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;