RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA674050" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA674050 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8296574 8296574 PRJNA674050_P_NODE_1187_length_617_cov_1.659926_g991_i0 PRJNA674050 1187 617 1.659926 10.24174342 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 265 1.9699999999999998e-82   NR MBX6334820.1 2026720 g991 i0 65.9 0.9967585089141 205 68 99.7 2 3 617 279 481 MBX6334820.1 hypothetical protein [Candidatus Saccharibacteria bacterium] diamond 615 265 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
29860603 29860603 PRJNA674050_P_NODE_20331_length_257_cov_2.119565_g20128_i0 PRJNA674050 20331 257 2.119565 5.44728205 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 90.9 5.22e-19   NR MBX6334148.1 2026720 g20128 i0 70.5 0.712062256809339 61 16 71.2 1 21 203 1126 1184 MBX6334148.1 DEAD/DEAH box helicase family protein [Candidatus Saccharibacteria bacterium] diamond 183 90.9 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
30093486 30093486 PRJNA674050_P_NODE_7432_length_320_cov_3.331984_g7229_i0 PRJNA674050 7432 320 3.331984 10.6623488 root 1 Root_unresolved Root_unresolved 117 4.29e-28   NR MBX6334148.1 2026720 g7229 i0 60.4 1.9875 106 42 99.4 0 2 319 192 297 MBX6334148.1 DEAD/DEAH box helicase family protein [Candidatus Saccharibacteria bacterium] diamond 636 117 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
31377486 31377486 PRJNA674050_P_NODE_2336_length_446_cov_3.029491_g2133_i0 PRJNA674050 2336 446 3.029491 13.51152986 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 94 4.75e-19   NR MBX6334148.1 2026720 g2133 i0 42.1 1.02242152466368 152 84 99.6 1 445 2 28 179 MBX6334148.1 DEAD/DEAH box helicase family protein [Candidatus Saccharibacteria bacterium] diamond 456 94 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;