RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA674050" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA674050 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28945236 28945236 PRJNA674050_P_NODE_8468_length_311_cov_2.563025_g8265_i0 PRJNA674050 8468 311 2.563025 7.97100775 Saccharomyces 2 3431059 Viruses Viruses 167 1.06e-45   NR NP_660178.1 186772 g8265 i0 83.5 0.993569131832797 103 17 99.4 0 310 2 261 363 NP_660178.1 RNA-dependent RNA polymerase [Saccharomyces 20S RNA narnavirus] diamond 309 167 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae Narnavirus Narnavirus saccharominor
31167612 31167612 PRJNA674050_P_NODE_3815_length_377_cov_1.493421_g3612_i0 PRJNA674050 3815 377 1.493421 5.63019717 Carlavirus 12163 Viruses Viruses 193 2.6099999999999998e-54   NR WOL52747.1 1092564 g3612 i0 78.4 1.9893899204244 125 27 99.5 0 3 377 285 409 WOL52747.1 replicase [Cucumber vein-clearing virus] diamond 750 193 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus cucumis
31504047 31504047 PRJNA674050_P_NODE_7936_length_316_cov_1.238683_g7733_i0 PRJNA674050 7936 316 1.238683 3.91423828 Xiangshan picorna-like virus 7 2886223 Viruses Viruses 87 1.6e-17   NR WNK16389.1 2886223 g7733 i0 42.3 0.987341772151899 104 60 98.7 0 315 4 211 314 WNK16389.1 MAG: RNA-dependent RNA polymerase, partial [Xiangshan picorna-like virus 7] diamond 312 87 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Xiangshan picorna-like virus 7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;