RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA674048" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA674048 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27966106 27966106 PRJNA674048_P_NODE_30165_length_165_cov_0.896552_g29962_i0 PRJNA674048 30165 165 0.896552 1.4793108 Giardia intestinalis 5741 Fornicata other_Eukaryota 46.6 5.63e-4   NR ESU39526.1 5741 g29962 i0 54.3 0.636363636363636 35 13 58.2 1 103 8 14 48 ESU39526.1 Hypothetical protein DHA2_151120 [Giardia intestinalis] diamond 105 46.6 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
28502947 28502947 PRJNA674048_P_NODE_15407_length_228_cov_1.000000_g15204_i0 PRJNA674048 15407 228 1 2.28 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 42.4 0.0432   NR KAG9392170.1 201153 g15204 i0 52.3 0.578947368421053 44 20 56.6 1 193 65 3829 3872 KAG9392170.1 FG-GAP repeat [Carpediemonas membranifera] diamond 132 42.4 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
29481394 29481394 PRJNA674048_P_NODE_28090_length_168_cov_0.873950_g27887_i0 PRJNA674048 28090 168 0.87395 1.468236 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 50.1 3.49e-5   NR KAG9396990.1 201153 g27887 i0 52.2 0.821428571428571 46 20 78.6 2 167 36 759 804 KAG9396990.1 ABC transporter substrate-binding protein [Carpediemonas membranifera] diamond 138 50.1 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;