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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA674048" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA674048 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28862019 28862019 PRJNA674048_P_NODE_29588_length_166_cov_0.888889_g29385_i0 PRJNA674048 29588 166 0.888889 1.47555574 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 53.1 2.83e-6   NR XP_039606628.1 55291 g29385 i0 39 6.01807228915663 59 31 97.6 1 163 2 696 754 XP_039606628.1 proprotein convertase subtilisin/kexin type 5b isoform X3 [Polypterus senegalus] diamond 999 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29209592 29209592 PRJNA674048_P_NODE_21089_length_191_cov_3.119718_g20886_i0 PRJNA674048 21089 191 3.119718 5.95866138 Opisthokonta 33154 Chordata Chordata 55.5 9.76e-8   NR XP_019639315.1 7741 g20886 i0 48 3.89528795811518 50 26 78.5 0 181 32 81 130 XP_019639315.1 PREDICTED: profilin-1A-like [Branchiostoma belcheri] diamond 744 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29765714 29765714 PRJNA674048_P_NODE_20591_length_194_cov_1.434483_g20388_i0 PRJNA674048 20591 194 1.434483 2.78289702 Xenopus laevis 8355 Chordata Chordata 42 0.0379   NR XP_018096756.1 8355 g20388 i0 34.3 1.08247422680412 70 34 95.9 5 6 191 938 1003 XP_018096756.1 SCO-spondin isoform X1 [Xenopus laevis] diamond 210 42 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
29797311 29797311 PRJNA674048_P_NODE_26071_length_172_cov_1.121951_g25868_i0 PRJNA674048 26071 172 1.121951 1.92975572 Hymenochirus boettgeri 247094 Chordata Chordata 47.4 3.25e-4   NR KAG8441433.1 247094 g25868 i0 51.9 0.941860465116279 54 25 92.4 1 12 170 647 700 KAG8441433.1 hypothetical protein GDO86_006974 [Hymenochirus boettgeri] diamond 162 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Hymenochirus Hymenochirus boettgeri
30188360 30188360 PRJNA674048_P_NODE_27352_length_169_cov_0.866667_g27149_i0 PRJNA674048 27352 169 0.866667 1.46466723 Metazoa 33208 Chordata Chordata 65.1 1.74e-10   NR XP_039251051.1 7725 g27149 i0 63.4 3.26627218934911 41 15 72.8 0 167 45 877 917 XP_039251051.1 mucin-3A-like [Styela clava] diamond 552 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
30441378 30441378 PRJNA674048_P_NODE_11173_length_278_cov_2.711790_g10970_i0 PRJNA674048 11173 278 2.71179 7.5387762 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 103 2.73e-24   NR MEE6463730.1 8439 g10970 i0 72.6 80.341726618705 62 17 66.9 0 2 187 235 296 MEE6463730.1 hypothetical protein [Ascaphus truei] diamond 22335 104 0.990384615384615 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
30757207 30757207 PRJNA674048_P_NODE_16914_length_216_cov_2.035928_g16711_i0 PRJNA674048 16914 216 2.035928 4.39760448 Metazoa 33208 Chordata Chordata 94.7 1.28e-20   NR KAG2469906.1 55291 g16711 i0 78.3 24.9027777777778 69 15 95.8 0 9 215 839 907 KAG2469906.1 GOGA1 protein, partial [Polypterus senegalus] diamond 5379 94.7 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31262760 31262760 PRJNA674048_P_NODE_11395_length_275_cov_1.827434_g11192_i0 PRJNA674048 11395 275 1.827434 5.0254435 Chordata 7711 Chordata Chordata 45.8 0.00474   NR XP_053575473.1 8345 g11192 i0 69 1.0581818181818201 29 9 31.6 0 110 24 1255 1283 XP_053575473.1 LOW QUALITY PROTEIN: hydrocephalus-inducing protein homolog [Bombina bombina] diamond 291 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
31978280 31978280 PRJNA674048_P_NODE_23878_length_180_cov_1.465649_g23675_i0 PRJNA674048 23878 180 1.465649 2.6381682 Physeter macrocephalus 9755 Chordata Chordata 57 1.46e-7   NR XP_054944300.1 9755 g23675 i0 54.3 0.766666666666667 46 21 76.7 0 170 33 75 120 XP_054944300.1 G-protein coupled receptor 176 isoform X1 [Physeter macrocephalus] diamond 138 57 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Physeter Physeter macrocephalus
32168429 32168429 PRJNA674048_P_NODE_7618_length_355_cov_2.379085_g7415_i0 PRJNA674048 7618 355 2.379085 8.44575175 Hypanus sabinus 79690 Chordata Chordata 72 7.19e-12   NR XP_059816063.1 79690 g7415 i0 38.9 1.6056338028169 95 53 76.1 1 17 286 110 204 XP_059816063.1 uncharacterized protein LOC132387718 [Hypanus sabinus] diamond 570 72 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
32326806 32326806 PRJNA674048_P_NODE_21959_length_188_cov_1.122302_g21756_i0 PRJNA674048 21959 188 1.122302 2.10992776 Ciona intestinalis 7719 Chordata Chordata 56.2 3.11e-7   NR XP_026690802.1 7719 g21756 i0 57.1 0.670212765957447 42 18 67 0 187 62 102 143 XP_026690802.1 neurogenic locus notch homolog protein 1 [Ciona intestinalis] diamond 126 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
32358326 32358326 PRJNA674048_P_NODE_28479_length_167_cov_0.881356_g28276_i0 PRJNA674048 28479 167 0.881356 1.47186452 Cyrtonyx montezumae 9017 Chordata Chordata 61.6 2.9e-9   NR XP_065587235.1 9017 g28276 i0 58 4.65269461077844 50 21 89.8 0 165 16 504 553 XP_065587235.1 LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX34 [Cyrtonyx montezumae] diamond 777 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Odontophoridae Cyrtonyx Cyrtonyx montezumae
32799676 32799676 PRJNA674048_P_NODE_13000_length_252_cov_2.093596_g12797_i0 PRJNA674048 13000 252 2.093596 5.27586192 Erpetoichthys calabaricus 27687 Chordata Chordata 65.9 2.38e-10   NR XP_051791274.1 27687 g12797 i0 48.2 4.94047619047619 83 16 98.8 1 3 251 175 230 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 1245 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
32906142 32906142 PRJNA674048_P_NODE_28460_length_167_cov_0.881356_g28257_i0 PRJNA674048 28460 167 0.881356 1.47186452 Anura 8342 Chordata Chordata 83.6 5.41e-17   NR MEE6520153.1 8439 g28257 i0 65.5 11.8562874251497 55 19 98.8 0 167 3 902 956 MEE6520153.1 hypothetical protein [Ascaphus truei] diamond 1980 84.3 0.991696322657177 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;