RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA674048" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA674048 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29292238 29292238 PRJNA674048_P_NODE_27649_length_168_cov_1.218487_g27446_i0 PRJNA674048 27649 168 1.218487 2.04705816 Helicobacter pylori 210 Bacteria Bacteria 55.5 2.12e-8   NR GAA9208478.1 210 g27446 i0 81.3 1.14285714285714 32 6 57.1 0 31 126 10 41 GAA9208478.1 hypothetical protein Kyoto198A_0870 [Helicobacter pylori] diamond 192 55.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30492572 30492572 PRJNA674048_P_NODE_26153_length_171_cov_2.459016_g25950_i0 PRJNA674048 26153 171 2.459016 4.20491736 Helicobacter pylori 210 Bacteria Bacteria 51.2 1.2e-6   NR GAA8948737.1 210 g25950 i0 55.4 0.982456140350877 56 15 98.2 1 169 2 11 56 GAA8948737.1 hypothetical protein Kyoto181A_0640 [Helicobacter pylori] diamond 168 51.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31725194 31725194 PRJNA674048_P_NODE_34157_length_152_cov_2.184466_g33954_i0 PRJNA674048 34157 152 2.184466 3.32038832 Helicobacter pylori 210 Bacteria Bacteria 83.6 8.64e-20   NR GAA9125269.1 210 g33954 i0 100 0.730263157894737 37 0 73 0 151 41 2 38 GAA9125269.1 hypothetical protein Kyoto190A_0810 [Helicobacter pylori] diamond 111 83.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;