RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA674048" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA674048 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26606725 26606725 PRJNA674048_P_NODE_32001_length_163_cov_0.912281_g31798_i0 PRJNA674048 32001 163 0.912281 1.48701803 Bdellovibrio sp. 28201 Bacteria Bacteria 96.3 7.43e-22   NR WP_415063513.1 28201 g31798 i0 85.2 1.98773006134969 54 8 99.4 0 2 163 165 218 WP_415063513.1 hypothetical protein [Bdellovibrio sp.] diamond 324 96.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
27587395 27587395 PRJNA674048_P_NODE_30264_length_165_cov_0.896552_g30061_i0 PRJNA674048 30264 165 0.896552 1.4793108 Bdellovibrio sp. 28201 Bacteria Bacteria 47 4.01e-4   NR MFM6927017.1 28201 g30061 i0 41.5 0.963636363636364 53 31 96.4 0 164 6 190 242 MFM6927017.1 hypothetical protein [Bdellovibrio sp.] diamond 159 47 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
28755512 28755512 PRJNA674048_P_NODE_32747_length_162_cov_0.920354_g32544_i0 PRJNA674048 32747 162 0.920354 1.49097348 uncultured Bdellovibrio sp. 239744 Bacteria Bacteria 115 1.09e-28   NR WP_295905672.1 239744 g32544 i0 98.1 2 54 1 100 0 162 1 365 418 WP_295905672.1 NAD(P)/FAD-dependent oxidoreductase [uncultured Bdellovibrio sp.] diamond 324 115 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio uncultured Bdellovibrio sp.
28850058 28850058 PRJNA674048_P_NODE_32868_length_162_cov_0.920354_g32665_i0 PRJNA674048 32868 162 0.920354 1.49097348 Bdellovibrio sp. HCB2-146 3394362 Bacteria Bacteria 60.8 3.15e-9   NR WP_413940221.1 3394362 g32665 i0 87.9 1.24074074074074 33 4 61.1 0 61 159 4 36 WP_413940221.1 SDR family oxidoreductase [Bdellovibrio sp. HCB2-146] diamond 201 60.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB2-146
28881729 28881729 PRJNA674048_P_NODE_25948_length_172_cov_1.691057_g25745_i0 PRJNA674048 25948 172 1.691057 2.90861804 Bdellovibrio sp. 28201 Bacteria Bacteria 55.1 6.08e-7   NR NUN07072.1 28201 g25745 i0 50 0.906976744186046 52 26 90.7 0 15 170 239 290 NUN07072.1 hypothetical protein [Bdellovibrio sp.] diamond 156 55.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;