RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA674048" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA674048 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27492630 27492630 PRJNA674048_P_NODE_23023_length_183_cov_1.940299_g22820_i0 PRJNA674048 23023 183 1.940299 3.55074717 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 57.8 8.1e-8   NR KAI2489933.1 210448 g22820 i0 53.4 9.42622950819672 58 25 91.8 1 14 181 176 233 KAI2489933.1 ABC-2 type transporter [Fragilaria crotonensis] diamond 1725 57.8 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
29229347 29229347 PRJNA674048_P_NODE_30749_length_164_cov_1.200000_g30546_i0 PRJNA674048 30749 164 1.2 1.968 Fistulifera solaris 1519565 SAR_Eukaryotes SAR_Eukaryotes 41.6 0.0329   NR GAX14402.1 1519565 g30546 i0 47.1 0.621951219512195 34 18 62.2 0 108 7 339 372 GAX14402.1 pre-rRNA-processing protein TSR4 [Fistulifera solaris] diamond 102 41.6 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Fistulifera Fistulifera solaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;