RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA672101" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA672101 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27934632 27934632 PRJNA672101_S_NODE_22665_length_273_cov_6.520000_g22634_i0 PRJNA672101 22665 273 6.52 17.7996 Polyangiales bacterium 3034171 Bacteria Bacteria 49.3 2.17e-4   NR MET0287607.1 3034171 g22634 i0 32.6 2.9010989010989 89 53 94.5 2 273 16 164 248 MET0287607.1 N-formylglutamate amidohydrolase [Polyangiales bacterium] diamond 792 49.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
31409022 31409022 PRJNA672101_S_NODE_21936_length_276_cov_6.108374_g21905_i0 PRJNA672101 21936 276 6.108374 16.85911224 Polyangiaceae bacterium 2268199 Bacteria Bacteria 56.6 6.85e-7   NR HWZ89911.1 2268199 g21905 i0 62.5 0.521739130434783 48 17 51.1 1 272 132 361 408 HWZ89911.1 glycoside hydrolase family protein [Polyangiaceae bacterium] diamond 144 56.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;