RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA672101" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA672101 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26606704 26606704 PRJNA672101_S_NODE_8441_length_362_cov_6.138408_g8410_i0 PRJNA672101 8441 362 6.138408 22.22103696 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 99 3.0300000000000003e-21   NR XP_004339415.1 1257118 g8410 i0 58 2.22099447513812 88 35 72.9 2 4 267 1451 1536 XP_004339415.1 RhoGEF domain containing protein, partial [Acanthamoeba castellanii str. Neff] diamond 804 99 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29355510 29355510 PRJNA672101_S_NODE_14789_length_313_cov_5.233333_g14758_i0 PRJNA672101 14789 313 5.233333 16.38033229 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 78.2 2.85e-14   NR XP_004334498.1 1257118 g14758 i0 40 0.958466453674121 100 48 95.8 2 308 9 310 397 XP_004334498.1 uncharacterized protein ACA1_330890, partial [Acanthamoeba castellanii str. Neff] diamond 300 78.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31440513 31440513 PRJNA672101_S_NODE_12256_length_330_cov_4.727626_g12225_i0 PRJNA672101 12256 330 4.727626 15.6011658 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.9 6.88e-4   NR XP_004367756.1 1257118 g12225 i0 35.6 0.945454545454545 104 40 70 3 326 96 77 180 XP_004367756.1 BAG domain containing protein [Acanthamoeba castellanii str. Neff] diamond 312 48.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31472391 31472391 PRJNA672101_S_NODE_8976_length_357_cov_4.063380_g8945_i0 PRJNA672101 8976 357 4.06338 14.5062666 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 59.7 1.68e-7   NR XP_004341415.1 1257118 g8945 i0 30.1 1.03361344537815 123 78 100 3 1 357 60 178 XP_004341415.1 protein kinase domain containing protein [Acanthamoeba castellanii str. Neff] diamond 369 59.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32465052 32465052 PRJNA672101_S_NODE_9419_length_353_cov_3.885714_g9388_i0 PRJNA672101 9419 353 3.885714 13.71657042 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 53.9 1.67e-5   NR XP_004353097.1 1257118 g9388 i0 39.1 1.4957507082153 87 52 73.9 1 328 68 2075 2160 XP_004353097.1 uncharacterized protein ACA1_071910 [Acanthamoeba castellanii str. Neff] diamond 528 53.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;