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contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJNA672101" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA672101 · 22 ✖

analysis 1

  • diamond · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26733195 26733195 PRJNA672101_S_NODE_33881_length_237_cov_3.500000_g33850_i0 PRJNA672101 33881 237 3.5 8.295 Bos mutus 72004 Chordata Chordata 77 1.63e-16   NR MXQ97301.1 72004 g33850 i0 100 0.455696202531646 36 0 45.6 0 1 108 24 59 MXQ97301.1 hypothetical protein [Bos mutus] diamond 108 77 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos mutus
26986698 26986698 PRJNA672101_S_NODE_5582_length_398_cov_1.658462_g5551_i0 PRJNA672101 5582 398 1.658462 6.60067876 Pleurodeles waltl 8319 Chordata Chordata 176 5.35e-48   NR XP_069073832.1 8319 g5551 i0 70.9 7.07035175879397 117 34 88.2 0 398 48 600 716 XP_069073832.1 ATP-binding cassette sub-family C member 12 [Pleurodeles waltl] diamond 2814 176 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
27113184 27113184 PRJNA672101_S_NODE_19802_length_286_cov_3.272300_g19771_i0 PRJNA672101 19802 286 3.2723 9.358778 Rubrisciurus rubriventer 226573 Chordata Chordata 54.7 1.31e-6   NR ALP86271.1 226573 g19771 i0 47.2 2.41258741258741 72 38 75.5 0 19 234 27 98 ALP86271.1 NADH dehydrogenase subunit 6 [Rubrisciurus rubriventer] diamond 690 55.1 0.992740471869329 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Rubrisciurus Rubrisciurus rubriventer
27113185 27113185 PRJNA672101_S_NODE_32042_length_244_cov_0.900585_g32011_i0 PRJNA672101 32042 244 0.900585 2.1974274 Mus musculus 10090 Chordata Chordata 42.7 0.0288   NR EDL00966.1 10090 g32011 i0 85.7 0.258196721311475 21 3 25.8 0 93 31 2 22 EDL00966.1 zinc finger, CCHC domain containing 9, isoform CRA_b, partial [Mus musculus] diamond 63 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27271376 27271376 PRJNA672101_S_NODE_20943_length_281_cov_1.697115_g20912_i0 PRJNA672101 20943 281 1.697115 4.76889315 Marmota monax 9995 Chordata Chordata 52.4 2.07e-5   NR KAF7486720.1 9995 g20912 i0 68.4 0.405693950177936 38 12 40.6 0 4 117 253 290 KAF7486720.1 hypothetical protein GHT09_000934 [Marmota monax] diamond 114 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota monax
27587373 27587373 PRJNA672101_S_NODE_11544_length_336_cov_1.171103_g11513_i0 PRJNA672101 11544 336 1.171103 3.93490608 Capra hircus 9925 Chordata Chordata 62.4 6.32e-9   NR KAJ1061846.1 9925 g11513 i0 73.3 0.401785714285714 45 12 40.2 0 3 137 195 239 KAJ1061846.1 hypothetical protein K5549_002881 [Capra hircus] diamond 135 62.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capra Capra hircus
28060788 28060788 PRJNA672101_S_NODE_3165_length_452_cov_1.875989_g3134_i0 PRJNA672101 3165 452 1.875989 8.47947028 Mus musculus 10090 Chordata Chordata 43.9 0.0101   NR EDL36967.1 10090 g3134 i0 68 0.165929203539823 25 8 16.6 0 130 56 44 68 EDL36967.1 mCG148273 [Mus musculus] diamond 75 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
28376503 28376503 PRJNA672101_S_NODE_30306_length_247_cov_1.327586_g30275_i0 PRJNA672101 30306 247 1.327586 3.27913742 Canis lupus familiaris 9615 Chordata Chordata 65.1 1.86e-10   NR XP_038295596.1 9615 g30275 i0 69.2 0.631578947368421 52 15 63.2 1 2 157 172 222 XP_038295596.1 uncharacterized protein LOC106557927 [Canis lupus familiaris] diamond 156 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
28957095 28957095 PRJNA672101_S_NODE_5868_length_393_cov_4.478125_g5837_i0 PRJNA672101 5868 393 4.478125 17.59903125 Artiodactyla 91561 Chordata Chordata 60.1 8.76e-8   NR KAB0394371.1 9770 g5837 i0 93.1 0.66412213740458 29 2 22.1 0 25 111 43 71 KAB0394371.1 hypothetical protein E2I00_003629, partial [Balaenoptera physalus] diamond 261 60.5 0.993388429752066 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera physalus
29051817 29051817 PRJNA672101_S_NODE_22668_length_273_cov_5.775000_g22637_i0 PRJNA672101 22668 273 5.775 15.76575 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 65.1 7.48e-10   NR XP_040821418.1 130825 g22637 i0 44.4 4.0989010989011 72 38 79.1 1 41 256 312 381 XP_040821418.1 sodium channel protein type 10 subunit alpha isoform X3 [Ochotona curzoniae] diamond 1119 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Ochotonidae Ochotona Ochotona curzoniae
29083262 29083262 PRJNA672101_S_NODE_7108_length_377_cov_3.621711_g7077_i0 PRJNA672101 7108 377 3.621711 13.65385047 Mammalia 40674 Chordata Chordata 60.5 8.15e-8   NR XP_003467041.2 10141 g7077 i0 37.3 3.62864721485411 118 66 90.7 2 367 26 151 264 XP_003467041.2 homologous-pairing protein 2 homolog isoform X4 [Cavia porcellus] diamond 1368 60.8 0.995065789473684 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Caviidae Cavia Cavia porcellus
29229319 29229319 PRJNA672101_S_NODE_30489_length_247_cov_0.885057_g30458_i0 PRJNA672101 30489 247 0.885057 2.18609079 Phyllostomus discolor 89673 Chordata Chordata 42.4 0.0279   NR KAF6104115.1 89673 g30458 i0 38.3 0.57085020242915 47 29 57.1 0 92 232 104 150 KAF6104115.1 hypothetical protein HJG60_011162 [Phyllostomus discolor] diamond 141 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor
29335795 29335795 PRJNA672101_S_NODE_35169_length_212_cov_4.482014_g35138_i0 PRJNA672101 35169 212 4.482014 9.50186968 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 73.9 2.48e-13   NR XP_040217508.1 8407 g35138 i0 50 5.95754716981132 58 29 82.1 0 17 190 195 252 XP_040217508.1 NHL repeat-containing protein 2 isoform X2 [Rana temporaria] diamond 1263 73.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
29797287 29797287 PRJNA672101_S_NODE_24411_length_266_cov_4.922280_g24380_i0 PRJNA672101 24411 266 4.92228 13.0932648 Engystomops pustulosus 76066 Chordata Chordata 89.7 1.49e-18   NR KAG8571490.1 76066 g24380 i0 52.8 14.3458646616541 106 31 98.1 2 265 5 1005 1110 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 3816 89.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
30871578 30871578 PRJNA672101_S_NODE_31574_length_245_cov_0.895349_g31543_i0 PRJNA672101 31574 245 0.895349 2.19360505 Cricetulus griseus 10029 Chordata Chordata 51.6 2.18e-6   NR ERE74288.1 10029 g31543 i0 60.5 0.942857142857143 38 11 41.6 1 1 102 10 47 ERE74288.1 E3 ubiquitin-protein ligase [Cricetulus griseus] diamond 231 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
30903299 30903299 PRJNA672101_S_NODE_5074_length_406_cov_3.042042_g5043_i0 PRJNA672101 5074 406 3.042042 12.35069052 Galemys pyrenaicus 202257 Chordata Chordata 53.9 2.16e-5   NR KAG8507815.1 202257 g5043 i0 60 0.332512315270936 45 18 33.3 0 2 136 158 202 KAG8507815.1 Folliculin-interacting protein 1, partial [Galemys pyrenaicus] diamond 135 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Talpidae Galemys Galemys pyrenaicus
31199069 31199069 PRJNA672101_S_NODE_28775_length_250_cov_2.610169_g28744_i0 PRJNA672101 28775 250 2.610169 6.5254225 Mammalia 40674 Chordata Chordata 49.7 1.51e-4   NR XP_057170311.1 9644 g28744 i0 38.9 2.16 90 41 91.2 3 10 237 570 659 XP_057170311.1 granule associated Rac and RHOG effector protein 1 isoform X1 [Ursus arctos] diamond 540 50.1 0.992015968063872 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ursus Ursus arctos
31282353 31282353 PRJNA672101_S_NODE_35055_length_216_cov_4.307692_g35024_i0 PRJNA672101 35055 216 4.307692 9.30461472 Pteropus alecto 9402 Chordata Chordata 68.2 2.88e-11   NR ELK06828.1 9402 g35024 i0 51.6 0.888888888888889 64 31 88.9 0 25 216 2 65 ELK06828.1 hypothetical protein PAL_GLEAN10011960 [Pteropus alecto] diamond 192 68.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus alecto
31314049 31314049 PRJNA672101_S_NODE_20415_length_283_cov_4.033333_g20384_i0 PRJNA672101 20415 283 4.033333 11.41433239 Scyliorhinus canicula 7830 Chordata Chordata 47.8 0.00106   NR XP_038631011.1 7830 g20384 i0 41.2 1.74911660777385 51 29 53 1 86 235 133 183 XP_038631011.1 centromere protein I-like isoform X3 [Scyliorhinus canicula] diamond 495 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
32010036 32010036 PRJNA672101_S_NODE_26958_length_256_cov_4.065574_g26927_i0 PRJNA672101 26958 256 4.065574 10.40786944 Sagmatias obliquidens 3371155 Chordata Chordata 68.2 4.53e-11   NR XP_026938942.1 3371155 g26927 i0 63.6 1.546875 66 19 71.5 1 193 11 60 125 XP_026938942.1 LOW QUALITY PROTEIN: protein SET-like [Sagmatias obliquidens] diamond 396 68.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Sagmatias Sagmatias obliquidens
32263385 32263385 PRJNA672101_S_NODE_26378_length_259_cov_1.241935_g26347_i0 PRJNA672101 26378 259 1.241935 3.21661165 Eschrichtius robustus 9764 Chordata Chordata 50.1 1.11e-4   NR KAJ8787875.1 9764 g26347 i0 66.7 0.382239382239382 33 11 38.2 0 64 162 99 131 KAJ8787875.1 hypothetical protein J1605_022676 [Eschrichtius robustus] diamond 99 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
32433490 32433490 PRJNA672101_S_NODE_34859_length_223_cov_4.586667_g34828_i0 PRJNA672101 34859 223 4.586667 10.22826741 root 1 Root_unresolved Root_unresolved 156 5.2499999999999986e-43   NR XP_030110853.2 10090 g34828 i0 97.3 15.9282511210762 74 2 99.6 0 1 222 149 222 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 3552 156 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;