RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA672101" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA672101 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28092415 28092415 PRJNA672101_S_NODE_21545_length_278_cov_3.004878_g21514_i0 PRJNA672101 21545 278 3.004878 8.35356084 Chloropicon primus 1764295 Plants Plants 80.5 1.04e-16   NR QDZ21333.1 1764295 g21514 i0 51.1 0.992805755395683 92 43 99.3 1 276 1 72 161 QDZ21333.1 translation initiation factor 5A [Chloropicon primus] diamond 276 80.5 1 Eukaryota   Viridiplantae Chlorophyta Chloropicophyceae Chloropicales Chloropicaceae Chloropicon Chloropicon primus
28818312 28818312 PRJNA672101_S_NODE_9728_length_350_cov_8.061372_g9697_i0 PRJNA672101 9728 350 8.061372 28.214802 Micromonas pusilla CCMP1545 564608 Plants Plants 73.6 2.08e-12   NR XP_003056815.1 564608 g9697 i0 34.8 0.96 112 67 92.6 2 340 17 465 574 XP_003056815.1 voltage-gated ion channel superfamily [Micromonas pusilla CCMP1545] diamond 336 73.6 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas pusilla

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;