RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA672101" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA672101 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26923597 26923597 PRJNA672101_S_NODE_31022_length_246_cov_0.890173_g30991_i0 PRJNA672101 31022 246 0.890173 2.18982558 Paractinoplanes lichenicola 2802976 Bacteria Bacteria 43.5 0.0166   NR WP_202994310.1 2802976 g30991 i0 42.4 0.719512195121951 59 33 70.7 1 177 4 142 200 WP_202994310.1 DUF4386 domain-containing protein [Paractinoplanes lichenicola] diamond 177 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Paractinoplanes Paractinoplanes lichenicola
32231723 32231723 PRJNA672101_S_NODE_20998_length_281_cov_1.110577_g20967_i0 PRJNA672101 20998 281 1.110577 3.12072137 Streptomyces narbonensis 67333 Bacteria Bacteria 59.3 3.32e-8   NR WP_229833193.1 67333 g20967 i0 39.4 2.13523131672598 99 49 96.1 4 270 1 69 165 WP_229833193.1 hypothetical protein, partial [Streptomyces narbonensis] diamond 600 59.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces narbonensis
32453248 32453248 PRJNA672101_S_NODE_12259_length_330_cov_4.494163_g12228_i0 PRJNA672101 12259 330 4.494163 14.8307379 Streptomyces physcomitrii 2724184 Bacteria Bacteria 156 1.84e-46   NR WP_246342120.1 2724184 g12228 i0 68.8 8.90909090909091 109 31 99.1 1 1 327 44 149 WP_246342120.1 hypothetical protein [Streptomyces physcomitrii] diamond 2940 156 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces physcomitrii
32484746 32484746 PRJNA672101_S_NODE_8679_length_360_cov_3.881533_g8648_i0 PRJNA672101 8679 360 3.881533 13.9735188 Bifidobacterium animalis 28025 Bacteria Bacteria 45.1 0.0164   NR MED7637831.1 28025 g8648 i0 51.7 0.741666666666667 89 32 70 3 87 338 69 151 MED7637831.1 hypothetical protein [Bifidobacterium animalis] diamond 267 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;