RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA672101" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA672101 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28502927 28502927 PRJNA672101_S_NODE_15927_length_306_cov_2.313305_g15896_i0 PRJNA672101 15927 306 2.313305 7.0787133 Perkinsela sp. CCAP 156 1935466 Euglenozoa other_Eukaryota 107 9.52e-27   NR KNH08279.1 1314962 g15896 i0 71 6.20588235294118 69 20 67.6 0 281 75 134 202 KNH08279.1 rRNA-processing protein Fcf1/Utp23 [Perkinsela sp. CCAP 1560/4] diamond 1899 107 1 Eukaryota Discoba   Euglenozoa Kinetoplastea   Ichthyobodonidae Perkinsela Perkinsela sp. CCAP 1560/4
29556619 29556619 PRJNA672101_S_NODE_28770_length_250_cov_2.762712_g28739_i0 PRJNA672101 28770 250 2.762712 6.90678 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 117 7.879999999999999e-31   NR QLA09565.1 3039 g28739 i0 68.7 14.928 83 26 99.6 0 249 1 133 215 QLA09565.1 40S small subunit ribosomal protein uS3 [Euglena gracilis] diamond 3732 118 0.991525423728814 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;